Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 7.2e-139 497.3 259 100.0
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 1.5e-136 489.6 259 98.1
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 2.5e-131 472.2 260 95.4
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.6e-117 426.4 269 84.8
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.0e-116 423.7 269 83.6
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 1.4e-110 403.3 261 82.4
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 4.0e-89 332.0 206 83.5
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 6.9e-89 331.3 207 83.6
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 9.0e-89 330.9 206 84.0
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 1.2e-88 330.5 256 71.1
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.5e-88 330.1 206 83.0
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 1.5e-88 330.1 206 83.0
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 2.6e-88 329.3 206 83.0
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 3.4e-88 328.9 233 75.5
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 3.4e-88 328.9 277 68.6
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 4.4e-88 328.6 207 83.1
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 7.6e-88 327.8 204 83.3
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 7.6e-88 327.8 246 72.8
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 9.9e-88 327.4 232 75.4
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 9.9e-88 327.4 206 83.0
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.3e-87 327.0 206 82.0
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 1.3e-87 327.0 267 67.4
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 2.2e-87 326.2 232 75.0
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 2.2e-87 326.2 268 70.5
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 2.2e-87 326.2 206 83.0
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 2.9e-87 325.9 206 82.5
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 3.8e-87 325.5 193 86.0
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 4.9e-87 325.1 264 68.9
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 4.9e-87 325.1 274 68.2
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 6.4e-87 324.7 200 84.0
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 8.4e-87 324.3 206 79.6
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 1.9e-86 323.2 201 85.1
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 4.2e-86 322.0 232 75.0
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 4.2e-86 322.0 253 68.4
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 5.4e-86 321.6 203 81.8
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 5.4e-86 321.6 249 69.5
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 5.4e-86 321.6 268 67.2
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 7.1e-86 321.2 266 67.7
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 7.1e-86 321.2 220 77.3
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 9.3e-86 320.9 201 82.6
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 9.3e-86 320.9 259 69.9
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 9.3e-86 320.9 248 71.8
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 1.2e-85 320.5 280 66.4
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 2.7e-85 319.3 204 80.9
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 2.7e-85 319.3 260 68.8
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 4.6e-85 318.5 203 80.3
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 7.8e-85 317.8 237 73.0
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 7.8e-85 317.8 269 66.5
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 1.7e-84 316.6 203 82.3
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 1.7e-84 316.6 235 72.8
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 2.3e-84 316.2 213 77.9
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 2.3e-84 316.2 266 68.4
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 3.0e-84 315.8 197 81.2
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 3.0e-84 315.8 203 80.3
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 3.9e-84 315.5 203 81.8
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 5.1e-84 315.1 203 81.8
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 5.1e-84 315.1 213 77.9
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 6.6e-84 314.7 195 83.1
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 8.7e-84 314.3 264 66.3
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 1.1e-83 313.9 204 80.4
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 1.1e-83 313.9 200 80.5
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 1.1e-83 313.9 197 82.7
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 1.5e-83 313.5 203 80.8
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 2.5e-83 312.8 191 81.7
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 2.5e-83 312.8 201 80.6
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 3.3e-83 312.4 191 81.7
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 7.3e-83 311.2 188 83.5
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 9.6e-83 310.8 269 65.8
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 2.1e-82 309.7 219 74.0
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 4.8e-82 308.5 269 65.1
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 6.2e-82 308.1 263 65.4
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 8.1e-82 307.8 224 72.8
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 1.1e-81 307.4 273 64.1
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 1.1e-81 307.4 263 64.3
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 1.1e-81 307.4 203 80.8
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 1.4e-81 307.0 273 63.7
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 1.8e-81 306.6 202 79.7
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 2.4e-81 306.2 188 81.9
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 4.0e-81 305.4 271 65.7
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 6.9e-81 304.7 271 65.7
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 6.9e-81 304.7 259 64.9
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 1.5e-80 303.5 274 64.6
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 3.4e-80 302.4 271 64.9
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 4.5e-80 302.0 271 63.5
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 5.8e-80 301.6 212 75.0
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 5.8e-80 301.6 268 63.4
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 1.7e-79 300.1 268 61.9
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 1.7e-79 300.1 266 63.9
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 1.7e-79 300.1 266 63.9
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 2.9e-79 299.3 269 62.8
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 1.4e-78 297.0 266 63.5
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 1.4e-78 297.0 198 75.3
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 1.4e-78 297.0 208 74.0
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 4.2e-78 295.4 242 64.5
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 5.4e-78 295.0 193 76.7
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 9.3e-78 294.3 256 63.7
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 7.9e-77 291.2 271 62.0
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 7.9e-77 291.2 200 74.5
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 4.0e-73 278.9 204 73.0
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 2.0e-72 276.6 260 61.9
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 1.1e-70 270.8 212 65.6
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 3.0e-68 262.7 210 64.3
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 3.9e-68 262.3 207 71.0
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 1.1e-67 260.8 194 65.5
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 1.2e-64 250.8 232 62.9
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 6.5e-63 245.0 207 60.9
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 4.1e-57 225.7 144 82.6
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 4.6e-53 212.2 201 61.7
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 1.4e-52 210.7 206 59.7
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 3.7e-50 202.6 110 90.9
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 4.8e-50 202.2 138 76.8
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 4.8e-50 202.2 220 50.0
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 9.4e-46 188.0 185 51.4
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 1.4e-44 184.1 148 67.6
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 3.9e-44 182.6 210 52.9
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 4.4e-43 179.1 110 76.4
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 2.5e-38 163.3 188 46.8
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 6.1e-29 132.1 132 60.6
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.1e-22 111.3 86 69.8
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 1.7e-15 87.4 74 66.2
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 2.8e-13 80.1 49 75.5
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 8.9e-12 75.1 109 48.6
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 1.2e-08 64.7 44 75.0
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 4.5e-08 62.8 44 61.4


User provided reference genes

Program Settings