Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 1.9e-29 132.1 79 100.0
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 2.2e-22 108.6 84 78.6
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 4.3e-18 94.4 84 70.2
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 4.0e-16 87.8 63 61.9
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 9.0e-16 86.7 62 64.5
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 9.9e-15 83.2 89 49.4
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 9.9e-15 83.2 89 48.3
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 2.9e-14 81.6 82 62.2
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 4.9e-14 80.9 65 58.5
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 4.9e-14 80.9 65 58.5
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 4.9e-14 80.9 65 58.5
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 4.9e-14 80.9 65 58.5
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 8.4e-14 80.1 66 59.1
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 1.4e-13 79.3 84 64.3
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 4.2e-13 77.8 64 56.2
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 7.1e-13 77.0 84 48.8
Solyc01g112230.4 Solanum lycopersicum HOM05D007709 ORTHO05D009577 9.3e-13 76.6 42 100.0
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 2.7e-12 75.1 85 58.8
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 4.6e-12 74.3 60 53.3
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 6.0e-12 73.9 58 53.4
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 7.9e-12 73.6 68 51.5
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 1.0e-11 73.2 87 44.8
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 1.8e-11 72.4 78 47.4
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 2.3e-11 72.0 87 59.8
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 2.3e-11 72.0 87 59.8
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 2.3e-11 72.0 87 59.8
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 3.9e-11 71.2 83 53.0
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 3.9e-11 71.2 80 58.8
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 3.9e-11 71.2 53 56.6
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 6.7e-11 70.5 69 50.7
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 6.7e-11 70.5 86 59.3
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 8.7e-11 70.1 72 51.4
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 8.7e-11 70.1 87 58.6
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 8.7e-11 70.1 87 58.6
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.1e-10 69.7 57 56.1
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 1.9e-10 68.9 83 44.6
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 2.5e-10 68.6 63 55.6
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 5.6e-10 67.4 63 52.4
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 1.6e-09 65.9 65 50.8
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.6e-09 65.9 59 52.5
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 1.6e-09 65.9 64 48.4
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 2.8e-09 65.1 61 50.8
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 2.8e-09 65.1 57 50.9
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 3.7e-09 64.7 55 52.7
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 3.7e-09 64.7 63 52.4
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 3.7e-09 64.7 69 49.3
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 3.7e-09 64.7 69 47.8
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 4.8e-09 64.3 66 40.9
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 8.1e-09 63.5 83 50.6
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 8.1e-09 63.5 83 50.6
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 8.1e-09 63.5 81 51.9
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 8.1e-09 63.5 63 49.2
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.1e-08 63.2 68 47.1
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 1.1e-08 63.2 88 48.9
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 1.4e-08 62.8 68 45.6
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 1.8e-08 62.4 63 47.6
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 1.8e-08 62.4 56 41.1
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 2.4e-08 62.0 62 53.2
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 2.4e-08 62.0 65 49.2
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 3.1e-08 61.6 62 51.6
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 4.0e-08 61.2 64 51.6
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 4.0e-08 61.2 74 43.2
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 5.3e-08 60.8 57 49.1
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 1.2e-07 59.7 60 45.0
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 1.5e-07 59.3 65 44.6
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.5e-07 59.3 56 51.8
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.5e-07 59.3 56 51.8
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.5e-07 59.3 56 51.8
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 3.4e-07 58.2 62 50.0
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.3e-06 56.2 50 52.0
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 1.3e-06 56.2 62 43.5
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 1.3e-06 56.2 62 43.5
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 1.7e-06 55.8 82 43.9
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 1.7e-06 55.8 82 43.9
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 2.2e-06 55.5 63 42.9
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 2.2e-06 55.5 60 45.0
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 6.4e-06 53.9 60 43.3
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 8.4e-06 53.5 51 45.1


User provided reference genes

Program Settings