Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.0e-157 560.1 290 100.0
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 8.1e-155 550.4 290 98.6
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.9e-143 512.7 290 93.4
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 3.2e-127 458.8 291 83.8
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.9e-117 425.2 271 83.0
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 1.5e-113 413.3 286 76.2
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.7e-112 409.8 265 82.6
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.3e-64 250.8 288 51.4
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 3.7e-59 232.6 291 49.5
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 2.9e-51 206.5 297 45.8
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.1e-50 204.5 290 45.9
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.2e-46 191.0 300 44.7
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.9e-42 177.2 292 43.5
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 4.6e-41 172.6 237 46.0
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 3.0e-40 169.9 291 41.9
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 5.0e-40 169.1 293 41.6
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.1e-39 167.9 294 41.8
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.5e-39 167.5 292 42.5
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.5e-39 166.8 290 40.7
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.5e-39 166.8 290 40.7
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 9.5e-39 164.9 272 42.3
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 9.5e-39 164.9 290 40.7
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 2.1e-38 163.7 289 40.8
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.1e-38 163.7 293 39.2
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.8e-38 163.3 291 43.0
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 6.2e-38 162.2 288 39.9
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 8.1e-38 161.8 284 39.4
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.4e-37 161.0 285 40.7
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.8e-37 160.6 294 39.5
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 2.3e-37 160.2 292 40.1
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 4.0e-37 159.5 270 42.6
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 4.0e-37 159.5 292 40.4
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 6.8e-37 158.7 300 39.3
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 1.5e-36 157.5 288 40.3
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 7.5e-36 155.2 289 41.2
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 7.5e-36 155.2 297 38.0
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 7.5e-36 155.2 276 43.5
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 9.8e-36 154.8 294 41.5
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.7e-35 154.1 270 43.7
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.2e-35 153.7 276 42.8
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 2.2e-35 153.7 290 39.7
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 1.1e-34 151.4 293 40.3
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.4e-34 151.0 291 40.9
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 5.4e-34 149.1 284 41.5
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 5.4e-34 149.1 295 40.3
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 9.2e-34 148.3 291 39.2
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.2e-33 147.9 276 41.3
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 2.1e-33 147.1 288 38.5
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 2.7e-33 146.7 291 40.2
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 3.5e-33 146.4 283 37.1
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 6.0e-33 145.6 291 38.1
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 7.8e-33 145.2 283 35.7
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.3e-32 144.4 300 37.3
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 2.3e-32 143.7 282 36.9
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 6.6e-32 142.1 287 35.9
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 8.6e-32 141.7 263 38.4
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.1e-31 141.4 278 37.4
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.5e-31 140.2 232 45.7
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 4.3e-31 139.4 290 38.3
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 5.6e-31 139.0 292 37.0
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 9.5e-31 138.3 283 36.4
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.2e-30 137.9 287 34.8
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 2.8e-30 136.7 268 38.4
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 6.8e-29 132.1 296 36.5
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 6.8e-29 132.1 276 37.0
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 4.4e-28 129.4 292 39.0
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.9e-28 128.3 203 45.3
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.9e-26 124.0 248 39.1
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.4e-26 123.6 227 39.6
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.2e-26 123.2 257 40.5
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.1e-25 120.6 268 36.9
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 6.0e-25 119.0 264 37.5
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 7.8e-25 118.6 202 43.1
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 7.8e-25 118.6 292 35.3
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.0e-24 118.2 262 37.8
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.7e-24 117.5 278 34.9
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.0e-24 116.7 280 35.4
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.1e-22 110.5 286 32.9
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.4e-21 107.8 114 53.5
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 2.4e-21 107.1 270 33.0
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 3.1e-21 106.7 224 38.4
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 5.2e-21 105.9 242 30.6
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 5.8e-20 102.4 201 39.3
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 7.6e-20 102.1 238 35.3
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 7.6e-20 102.1 248 35.5
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 1.3e-19 101.3 189 40.7
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 3.8e-19 99.8 120 48.3
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 8.4e-19 98.6 249 33.7
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.1e-18 98.2 110 52.7
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-18 98.2 110 52.7
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-18 98.2 110 52.7
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 3.2e-18 96.7 190 36.3
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 4.2e-18 96.3 255 37.6
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 5.4e-18 95.9 263 32.7
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 5.4e-18 95.9 116 51.7
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 9.3e-18 95.1 218 34.9
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 1.2e-17 94.7 263 31.9
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.2e-17 94.7 115 52.2
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.8e-17 92.0 110 50.9
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.8e-17 92.0 110 50.9
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.3e-16 91.3 268 31.7
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 2.3e-16 90.5 265 30.2
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 5.1e-16 89.4 83 57.8
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 8.7e-16 88.6 266 31.6
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.5e-15 87.8 270 32.6
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.9e-15 87.4 266 30.1
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 2.5e-15 87.0 266 30.1
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 3.3e-15 86.7 273 32.2
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 7.3e-15 85.5 212 35.8
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 3.6e-14 83.2 68 63.2
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.6e-14 83.2 125 44.8
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 4.8e-14 82.8 283 28.6
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 4.8e-14 82.8 189 33.3
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.4e-13 81.3 289 28.4
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.1e-13 80.1 277 31.0
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 4.0e-13 79.7 276 31.5
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 5.3e-13 79.3 68 60.3
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 5.3e-13 79.3 68 60.3
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 5.3e-13 79.3 259 30.9
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 5.3e-13 79.3 265 31.7
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.9e-13 79.0 107 43.9
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.5e-12 77.8 259 29.0
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 2.0e-12 77.4 76 56.6
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 3.4e-12 76.6 212 34.4
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 4.5e-12 76.3 279 30.8
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 4.5e-12 76.3 258 30.6
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 4.5e-12 76.3 311 29.6
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 5.8e-12 75.9 123 42.3
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 5.8e-12 75.9 262 29.8
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 9.9e-12 75.1 289 29.1
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 9.9e-12 75.1 283 30.0
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 2.2e-11 73.9 112 45.5
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.2e-11 73.9 210 31.9
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 4.9e-11 72.8 265 29.4
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 6.4e-11 72.4 206 34.0
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 8.4e-11 72.0 111 37.8
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.1e-10 71.6 283 29.7
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 3.2e-10 70.1 69 56.5
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 3.2e-10 70.1 263 30.8
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 3.2e-10 70.1 77 45.5
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 7.1e-10 68.9 274 28.1
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 7.1e-10 68.9 75 46.7
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.6e-09 67.8 66 59.1
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.1e-09 67.4 268 29.9
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 4.6e-09 66.2 66 57.6
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 4.6e-09 66.2 242 27.7
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.3e-08 64.7 65 52.3
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 2.3e-08 63.9 131 37.4
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 3.0e-08 63.5 84 40.5
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 3.9e-08 63.2 99 38.4
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 5.1e-08 62.8 53 62.3
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 5.1e-08 62.8 122 34.4
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 6.7e-08 62.4 66 54.5
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 6.7e-08 62.4 66 47.0
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 8.7e-08 62.0 197 33.0
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 5.6e-07 59.3 109 37.6
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.6e-07 59.3 195 32.8
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.6e-06 57.8 264 29.2
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.8e-06 57.0 114 35.1
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 3.7e-06 56.6 72 41.7
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 4.8e-06 56.2 125 36.0


User provided reference genes

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