Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 2.1e-129 465.7 228 100.0
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 2.3e-128 462.2 228 98.7
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 3.4e-124 448.4 227 96.9
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 1.8e-117 426.0 227 91.6
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 5.2e-117 424.5 227 90.7
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 5.4e-114 414.5 227 89.4
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 1.5e-95 353.2 228 73.7
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 4.3e-95 351.7 228 73.7
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 6.2e-94 347.8 228 71.5
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 3.1e-93 345.5 228 72.8
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 5.3e-93 344.7 223 70.9
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 5.3e-93 344.7 228 71.9
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 3.4e-92 342.0 224 71.9
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 1.3e-91 340.1 228 67.5
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 1.7e-91 339.7 226 71.2
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 8.4e-91 337.4 229 72.9
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 1.1e-90 337.0 228 70.2
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 1.4e-90 336.7 224 72.3
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 5.5e-90 334.7 224 71.4
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 7.1e-90 334.3 224 70.1
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 1.2e-89 333.6 243 66.7
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 2.7e-89 332.4 220 71.8
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 6.0e-89 331.3 228 69.7
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 7.9e-89 330.9 222 69.8
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 1.0e-88 330.5 224 68.8
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.0e-88 330.5 224 69.6
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 2.3e-88 329.3 232 68.1
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 3.0e-88 328.9 224 69.6
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 3.9e-88 328.6 234 68.8
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 5.1e-88 328.2 222 69.8
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 8.7e-88 327.4 229 67.7
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 8.7e-88 327.4 225 68.0
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.5e-87 325.9 224 69.2
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 4.3e-87 325.1 228 68.9
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 4.3e-87 325.1 225 69.8
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.1e-86 322.8 225 68.0
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 2.1e-86 322.8 228 66.2
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 6.2e-86 321.2 223 67.3
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 8.2e-86 320.9 224 67.0
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 1.8e-85 319.7 224 69.2
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 3.1e-85 318.9 228 67.1
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 3.1e-85 318.9 224 67.4
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 4.0e-85 318.5 228 65.8
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 5.3e-85 318.2 249 61.0
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 5.8e-84 314.7 229 65.9
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 1.7e-83 313.2 208 70.7
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 2.2e-83 312.8 220 65.9
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 2.2e-83 312.8 224 65.2
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 2.2e-83 312.8 229 65.5
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 2.9e-83 312.4 224 65.6
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 3.8e-83 312.0 224 65.2
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 3.8e-83 312.0 220 65.5
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 4.9e-83 311.6 224 66.1
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 8.4e-83 310.8 222 65.8
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 1.9e-82 309.7 224 65.2
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 2.5e-82 309.3 220 65.5
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 4.2e-82 308.5 221 65.6
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 4.2e-82 308.5 220 65.0
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 4.2e-82 308.5 230 66.1
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 5.5e-82 308.1 220 66.8
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 1.6e-81 306.6 224 63.8
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 1.0e-80 303.9 225 63.6
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 3.9e-80 302.0 226 62.4
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 1.1e-79 300.4 229 61.6
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 1.1e-79 300.4 224 64.3
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 1.1e-79 300.4 224 62.9
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 5.7e-79 298.1 227 62.1
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 5.7e-79 298.1 234 63.7
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 7.4e-79 297.7 220 63.6
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 1.3e-78 297.0 225 63.6
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 1.3e-78 297.0 225 59.6
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.8e-78 295.8 228 62.3
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 6.3e-78 294.7 220 64.1
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 2.4e-77 292.7 220 62.7
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.6e-76 289.3 228 61.0
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 4.5e-76 288.5 225 62.2
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 4.5e-76 288.5 221 62.9
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 7.7e-76 287.7 227 62.6
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 1.0e-75 287.3 225 58.7
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.9e-75 285.8 243 58.4
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.5e-75 284.3 243 58.4
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 5.5e-74 281.6 243 58.0
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 1.8e-72 276.6 221 65.6
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 2.4e-69 266.2 223 59.2
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 4.5e-68 261.9 233 54.5
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 7.7e-68 261.2 223 58.3
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 1.4e-66 256.9 172 70.9
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 1.6e-65 253.4 238 57.6
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 7.9e-65 251.1 220 53.2
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 1.4e-64 250.4 238 57.1
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 9.7e-63 244.2 169 66.9
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 4.8e-62 241.9 142 78.2
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 8.2e-62 241.1 164 65.9
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 5.3e-61 238.4 164 65.9
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 3.5e-60 235.7 164 66.5
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 1.7e-59 233.4 173 63.6
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 5.5e-58 228.4 232 49.1
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 2.7e-57 226.1 228 49.1
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 1.1e-55 220.7 219 52.1
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 4.4e-55 218.8 173 61.3
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 5.7e-55 218.4 156 63.5
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 5.3e-53 211.8 222 47.3
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.2e-52 210.7 170 61.2
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 2.0e-52 209.9 220 49.5
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.3e-51 207.2 167 61.7
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 3.5e-44 182.6 118 69.5
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 3.8e-43 179.1 118 66.9
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 5.0e-43 178.7 249 41.8
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 1.2e-41 174.1 108 73.1
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 5.2e-40 168.7 143 56.6
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 5.2e-40 168.7 134 64.2
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 7.0e-37 158.3 147 59.9
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 7.2e-34 148.3 127 56.7
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 1.2e-33 147.5 144 56.2
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 4.3e-26 122.5 106 56.6
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 2.1e-25 120.2 221 33.9
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.3e-16 90.1 63 65.1
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 5.8e-15 85.5 90 43.3
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 5.8e-15 85.5 90 43.3
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 1.1e-13 81.3 52 69.2
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 1.1e-13 81.3 52 69.2
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 1.6e-09 67.4 47 66.0
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 6.2e-09 65.5 183 29.0
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 2.3e-08 63.5 184 30.4
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 5.2e-08 62.4 226 28.3
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 6.8e-08 62.0 226 28.3
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 8.9e-08 61.6 187 32.6
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 1.2e-07 61.2 181 30.4
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 2.6e-07 60.1 226 27.4
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 7.6e-07 58.5 181 29.3
Lsat_1_v5_gn_5_39280 Lactuca sativa HOM05D002021 ORTHO05D002077 9.9e-07 58.2 188 28.2
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 1.3e-06 57.8 187 30.5
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 1.7e-06 57.4 226 27.0
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 4.9e-06 55.8 226 26.5
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 4.9e-06 55.8 183 27.9
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 8.4e-06 55.1 226 27.9


User provided reference genes

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