Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 1.3e-73 279.6 147 100.0
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 3.9e-73 278.1 147 99.3
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 6.5e-68 260.8 151 94.0
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 4.2e-67 258.1 147 93.9
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 1.1e-56 223.4 149 85.2
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 4.4e-48 194.9 146 76.0
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 7.4e-48 194.1 148 75.0
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.8e-46 189.5 145 67.6
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 1.8e-46 189.5 145 67.6
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 2.4e-46 189.1 145 71.0
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 7.0e-46 187.6 144 71.5
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 7.0e-46 187.6 145 67.6
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 7.7e-45 184.1 150 68.7
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 1.4e-43 179.9 149 65.8
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.9e-43 179.5 150 66.0
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 4.2e-43 178.3 148 66.9
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 7.2e-43 177.6 147 64.6
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 1.2e-42 176.8 144 68.1
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.6e-42 175.3 149 63.8
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.6e-42 175.3 149 63.8
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 1.0e-41 173.7 146 66.4
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 1.0e-41 173.7 151 61.6
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 1.4e-41 173.3 148 64.9
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.8e-41 172.9 143 63.6
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 3.9e-41 171.8 148 66.2
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 8.8e-41 170.6 154 61.7
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 8.8e-41 170.6 144 66.0
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 2.0e-40 169.5 147 63.9
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 2.6e-40 169.1 148 63.5
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 2.6e-40 169.1 148 61.5
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 4.4e-40 168.3 158 58.2
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 4.4e-40 168.3 139 64.7
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 5.7e-40 167.9 144 65.3
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 5.7e-40 167.9 147 65.3
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 5.7e-40 167.9 142 65.5
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 5.7e-40 167.9 143 64.3
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 7.4e-40 167.5 142 62.0
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 9.7e-40 167.2 143 65.7
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 1.3e-39 166.8 147 63.3
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 1.7e-39 166.4 142 62.0
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 1.7e-39 166.4 140 69.3
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 1.7e-39 166.4 143 63.6
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 3.7e-39 165.2 139 64.0
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 4.8e-39 164.9 139 64.0
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 8.2e-39 164.1 150 61.3
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 1.4e-38 163.3 159 59.1
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 1.8e-38 162.9 139 66.9
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 2.4e-38 162.5 149 63.1
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 2.4e-38 162.5 149 62.4
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 3.1e-38 162.2 158 60.8
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 4.1e-38 161.8 144 63.2
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 4.1e-38 161.8 144 64.6
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 7.0e-38 161.0 137 69.3
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 7.0e-38 161.0 147 59.2
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 2.0e-37 159.5 146 62.3
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 3.5e-37 158.7 144 61.8
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 7.7e-37 157.5 144 62.5
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 1.0e-36 157.1 143 60.8
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 1.7e-36 156.4 153 56.9
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 1.7e-36 156.4 147 64.6
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 2.2e-36 156.0 142 60.6
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 2.2e-36 156.0 135 62.2
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 3.8e-36 155.2 147 60.5
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 5.0e-36 154.8 144 61.8
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 5.0e-36 154.8 147 61.2
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 6.5e-36 154.5 148 56.8
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 6.5e-36 154.5 148 60.1
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 1.1e-35 153.7 144 60.4
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 1.1e-35 153.7 142 62.0
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 2.5e-35 152.5 147 57.8
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 3.2e-35 152.1 144 56.9
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 4.2e-35 151.8 145 60.7
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 4.2e-35 151.8 145 60.7
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 4.2e-35 151.8 145 60.0
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 7.2e-35 151.0 146 58.9
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 1.6e-34 149.8 151 56.3
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.6e-34 149.8 145 60.7
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.7e-34 149.1 132 62.9
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 8.0e-34 147.5 126 69.0
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 1.4e-33 146.7 135 63.0
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.4e-33 146.7 148 60.1
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.8e-33 146.4 140 60.0
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.3e-33 146.0 131 60.3
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 3.0e-33 145.6 131 61.8
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 3.0e-33 145.6 145 55.2
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 3.0e-33 145.6 145 57.2
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 4.0e-33 145.2 146 54.1
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 5.2e-33 144.8 145 57.9
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 5.2e-33 144.8 147 55.8
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 6.7e-33 144.4 145 58.6
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 1.2e-32 143.7 145 58.6
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 1.5e-32 143.3 145 57.2
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 2.6e-32 142.5 134 64.2
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 3.3e-32 142.1 145 55.9
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 1.3e-31 140.2 149 54.4
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 1.3e-31 140.2 145 54.5
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 1.8e-30 136.3 138 56.5
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 1.6e-29 133.3 143 53.8
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 2.0e-29 132.9 137 57.7
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 4.5e-29 131.7 143 53.8
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 7.7e-29 131.0 145 51.0
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 2.2e-28 129.4 142 52.1
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 3.8e-28 128.6 142 50.0
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 3.8e-28 128.6 147 51.0
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 5.0e-28 128.3 142 50.0
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 1.1e-27 127.1 142 50.7
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 1.9e-27 126.3 148 50.7
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 3.2e-27 125.6 142 50.7
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 3.2e-27 125.6 142 50.7
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 3.2e-27 125.6 142 50.7
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 3.2e-27 125.6 142 50.7
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 5.5e-27 124.8 147 47.6
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 4.7e-26 121.7 141 51.1
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 8.8e-25 117.5 152 47.4
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 1.4e-22 110.2 144 45.8
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 4.5e-21 105.1 141 43.3
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 1.7e-20 103.2 120 52.5
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 2.9e-20 102.4 119 52.9
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 5.0e-20 101.7 148 45.3
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 6.6e-20 101.3 66 77.3
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 2.1e-18 96.3 144 43.1
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 6.1e-18 94.7 117 48.7
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 3.4e-16 89.0 143 42.7
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 4.4e-16 88.6 71 66.2
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 8.3e-15 84.3 66 65.2
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 5.9e-13 78.2 100 43.0
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.0e-09 67.4 62 53.2
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 3.1e-09 65.9 141 33.3
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 4.0e-09 65.5 52 57.7
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 1.4e-06 57.0 44 63.6


User provided reference genes

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