Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 6.2e-233 810.4 416 100.0
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 7.6e-231 803.5 416 99.3
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 3.9e-211 738.0 416 91.3
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 7.1e-205 717.2 422 88.9
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 6.5e-198 694.1 446 82.1
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 2.5e-194 682.2 416 85.8
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 7.4e-186 654.1 432 81.7
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 4.1e-144 515.4 416 65.6
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 2.3e-142 509.6 415 66.3
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 3.3e-141 505.8 337 75.1
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 6.8e-139 498.0 343 75.2
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 1.2e-138 497.3 414 63.8
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 4.4e-138 495.4 416 63.7
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 1.6e-135 486.9 418 62.9
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 3.5e-135 485.7 414 63.8
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 7.8e-135 484.6 415 61.4
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 7.8e-135 484.6 420 62.4
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 7.8e-135 484.6 417 63.5
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 3.0e-134 482.6 418 61.2
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 3.9e-134 482.3 414 63.3
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 8.6e-134 481.1 334 73.1
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 3.1e-131 472.6 427 60.0
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 5.8e-130 468.4 418 61.0
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 7.5e-130 468.0 415 61.4
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 7.5e-130 468.0 419 61.3
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.2e-128 461.1 418 60.3
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 2.1e-127 459.9 417 60.4
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 2.1e-127 459.9 413 58.1
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 6.0e-127 458.4 413 58.6
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 1.0e-126 457.6 413 61.0
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 4.3e-125 452.2 420 58.8
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 5.6e-125 451.8 409 58.7
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 2.1e-124 449.9 417 59.7
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 2.8e-124 449.5 408 62.3
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 4.0e-123 445.7 419 57.8
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 6.8e-123 444.9 475 54.3
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 1.5e-122 443.7 413 56.4
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.1e-120 437.6 385 60.3
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 1.1e-120 437.6 392 59.4
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 1.9e-120 436.8 392 57.9
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 4.1e-120 435.6 415 57.1
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 4.1e-120 435.6 392 57.9
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 5.4e-120 435.3 402 58.2
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 5.4e-120 435.3 422 58.5
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 9.2e-120 434.5 415 57.1
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 9.2e-120 434.5 420 59.8
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 1.3e-118 430.6 420 55.0
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.3e-118 429.9 420 55.2
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 2.3e-118 429.9 416 57.7
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.6e-118 427.9 411 57.9
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 1.1e-117 427.6 418 57.7
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 1.5e-117 427.2 425 58.4
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 3.6e-116 422.5 416 57.2
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 6.2e-116 421.8 458 52.6
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 3.1e-115 419.5 366 59.0
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 3.4e-114 416.0 416 57.7
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 2.2e-113 413.3 340 60.6
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 8.4e-113 411.4 415 54.7
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 1.9e-112 410.2 410 54.1
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 2.4e-112 409.8 342 60.5
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 9.3e-112 407.9 314 63.4
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 9.3e-112 407.9 365 58.9
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 3.5e-111 406.0 254 79.1
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 1.5e-109 400.6 414 55.3
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 7.3e-109 398.3 424 55.9
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 3.6e-108 396.0 413 53.0
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 5.3e-107 392.1 367 59.1
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 3.4e-106 389.4 415 52.3
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 4.5e-106 389.0 426 53.5
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 1.7e-105 387.1 409 50.9
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 2.2e-105 386.7 352 57.1
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 3.8e-105 386.0 413 54.0
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 6.4e-105 385.2 429 52.9
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 7.1e-104 381.7 435 51.7
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 9.3e-104 381.3 335 61.2
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 3.5e-103 379.4 415 52.5
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 1.5e-101 374.0 420 51.7
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 4.3e-101 372.5 420 51.7
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 1.6e-100 370.5 423 51.1
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 6.2e-100 368.6 419 51.6
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 1.4e-99 367.5 419 51.3
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 1.8e-99 367.1 418 51.7
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 1.2e-98 364.4 417 51.1
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 4.5e-98 362.5 367 53.7
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 9.9e-98 361.3 419 50.8
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 9.9e-98 361.3 384 54.2
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 4.2e-96 355.9 380 51.6
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 2.4e-91 340.1 416 51.0
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 4.0e-91 339.3 427 48.7
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 1.5e-90 337.4 340 56.8
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 2.6e-90 336.7 413 49.6
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 6.3e-84 315.5 432 44.7
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 1.2e-82 311.2 242 63.6
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 2.9e-81 306.6 417 48.4
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 1.9e-80 303.9 336 51.5
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 2.7e-79 300.1 314 49.4
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 9.1e-75 285.0 191 72.3
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.0e-70 270.0 220 60.9
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 8.5e-65 251.9 313 47.3
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 1.3e-60 238.0 167 65.9
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 4.0e-54 216.5 392 34.7
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 8.8e-54 215.3 402 36.8
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 8.5e-49 198.7 434 34.6
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 7.7e-42 175.6 111 73.9
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.9e-40 171.0 152 59.2
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.9e-40 171.0 111 71.2
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.0e-38 163.3 129 62.0
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 4.4e-37 159.8 129 63.6
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 4.4e-37 159.8 133 62.4
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 5.7e-37 159.5 198 50.5
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 1.2e-34 151.8 177 51.4
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 5.7e-29 132.9 129 53.5
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 6.4e-28 129.4 185 41.6
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 4.1e-27 126.7 198 34.3
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 7.0e-27 125.9 169 48.5
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 5.2e-22 109.8 219 32.4
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.0e-21 107.8 77 62.3
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 3.7e-20 103.6 81 60.5
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 1.9e-19 101.3 69 66.7
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.2e-18 98.6 152 43.4
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.2e-18 98.6 61 72.1
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 5.6e-16 89.7 269 28.6
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 1.2e-15 88.6 283 26.9
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 1.2e-13 82.0 96 50.0
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 7.8e-10 69.3 54 61.1
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 5.1e-09 66.6 79 45.6
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 3.1e-06 57.4 59 45.8


User provided reference genes

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