Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 5.8e-303 1043.5 553 100.0
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 1.6e-300 1035.4 553 99.1
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 5.2e-296 1020.4 553 97.5
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 3.2e-277 958.0 550 92.0
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.3e-267 926.0 551 88.9
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.1e-266 922.9 551 88.6
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 1.7e-254 882.5 552 84.6
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 3.7e-217 758.4 558 73.5
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 3.0e-211 738.8 626 65.2
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.3e-206 722.6 566 69.1
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 1.6e-204 716.5 555 69.7
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 6.1e-204 714.5 594 66.5
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 3.9e-198 695.3 544 68.0
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.5e-197 693.3 546 67.6
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 3.3e-197 692.2 549 67.6
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 4.0e-195 685.3 583 65.9
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 4.0e-195 685.3 581 64.7
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 4.4e-194 681.8 532 69.0
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 5.8e-194 681.4 547 66.5
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 2.9e-193 679.1 565 64.8
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 1.9e-192 676.4 535 69.0
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 3.2e-192 675.6 514 69.5
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 5.4e-192 674.9 532 68.6
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 1.2e-191 673.7 531 70.1
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 1.6e-191 673.3 544 66.2
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 2.7e-191 672.5 545 66.6
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 4.6e-191 671.8 500 71.2
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 1.0e-190 670.6 564 64.9
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 1.7e-190 669.8 566 64.3
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 2.3e-190 669.5 546 65.8
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 5.1e-190 668.3 565 64.2
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.1e-189 667.2 557 65.0
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 1.9e-189 666.4 556 64.6
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 1.9e-189 666.4 550 66.2
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 5.6e-189 664.8 551 66.4
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 5.6e-189 664.8 551 66.4
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 7.3e-189 664.5 566 64.0
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.2e-188 663.7 543 66.1
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 1.2e-188 663.7 577 64.3
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.8e-188 662.5 551 65.2
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 6.2e-188 661.4 535 67.1
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 1.8e-187 659.8 548 65.3
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 2.3e-187 659.4 561 64.0
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.1e-187 659.1 552 66.1
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 4.0e-187 658.7 553 63.5
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 5.2e-187 658.3 552 63.6
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 6.8e-187 657.9 580 63.8
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 8.9e-187 657.5 558 64.9
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 1.5e-186 656.8 550 66.2
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 2.0e-186 656.4 540 66.5
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 2.0e-186 656.4 547 65.4
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 2.0e-186 656.4 582 62.5
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 5.8e-186 654.8 550 65.1
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 5.8e-186 654.8 560 63.9
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 7.6e-186 654.4 552 65.8
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 7.6e-186 654.4 552 63.8
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.7e-185 653.3 538 65.2
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 2.9e-185 652.5 530 66.8
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 3.7e-185 652.1 538 65.8
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 3.7e-185 652.1 538 66.0
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 6.4e-185 651.4 549 65.4
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.1e-184 650.6 533 66.6
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.1e-184 650.6 552 65.4
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 1.4e-184 650.2 538 63.8
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 2.4e-184 649.4 567 63.0
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 5.4e-184 648.3 538 65.6
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 1.6e-183 646.7 559 63.0
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 3.5e-183 645.6 546 63.4
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 4.6e-183 645.2 552 64.7
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 6.0e-183 644.8 547 64.7
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 1.3e-182 643.7 551 64.2
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 1.7e-182 643.3 539 64.9
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 1.7e-182 643.3 549 64.1
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 5.1e-182 641.7 555 62.9
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 6.6e-182 641.3 545 62.6
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.1e-181 640.6 522 66.1
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 2.5e-181 639.4 551 62.6
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 3.3e-181 639.0 541 63.0
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 4.3e-181 638.6 558 63.1
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 8.1e-180 634.4 538 62.6
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 6.8e-179 631.3 556 63.8
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 1.2e-178 630.6 550 60.5
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.5e-178 630.2 502 66.1
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 2.0e-178 629.8 537 62.6
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 1.3e-177 627.1 564 61.0
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 4.9e-177 625.2 545 62.8
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 3.2e-176 622.5 566 61.0
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 1.7e-174 616.7 549 61.6
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 3.0e-174 615.9 562 61.4
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 3.9e-174 615.5 547 60.1
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 4.0e-171 605.5 556 61.3
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 6.4e-169 598.2 460 68.3
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 1.3e-166 590.5 556 60.4
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 3.8e-153 545.8 558 55.9
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 7.1e-152 541.6 447 63.1
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.1e-148 530.0 507 60.0
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 5.3e-147 525.4 468 62.8
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.8e-140 503.1 503 57.5
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 6.3e-140 501.9 479 55.7
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 9.4e-136 488.0 580 47.8
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 3.0e-134 483.0 513 54.4
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 9.7e-125 451.4 393 63.1
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 2.7e-111 406.8 353 62.6
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 4.4e-109 399.4 519 43.9
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 1.1e-107 394.8 274 74.5
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.0e-105 388.3 310 65.5
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 7.2e-104 382.1 355 59.7
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.4e-102 377.9 296 67.9
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 2.3e-102 377.1 334 62.3
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 1.5e-101 374.4 304 65.1
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 2.2e-100 370.5 379 53.8
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 6.3e-100 369.0 304 64.5
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 5.4e-99 365.9 560 41.2
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.3e-97 360.5 395 52.9
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 1.6e-95 354.4 325 58.5
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 6.1e-95 352.4 325 58.2
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 7.5e-93 345.5 571 39.6
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 2.8e-87 327.0 508 39.0
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 9.5e-80 302.0 301 58.8
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 2.9e-76 290.4 256 60.9
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 1.8e-62 244.6 177 70.6
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 5.1e-49 199.9 506 32.6
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.1e-46 190.7 185 56.8
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 1.3e-44 185.3 269 45.0
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 5.1e-41 173.3 170 58.2
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 2.1e-34 151.4 446 27.4
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 6.0e-34 149.8 344 29.1
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 4.3e-32 143.7 116 64.7
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 1.3e-28 132.1 431 28.1
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.0e-28 130.2 107 65.4
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 8.5e-28 129.4 385 27.5
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 1.9e-24 118.2 349 27.5
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.8e-23 114.4 90 64.4
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 4.1e-22 110.5 72 70.8
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.3e-20 105.5 120 50.0
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 1.1e-19 102.4 156 42.9
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 7.9e-18 96.3 509 23.6
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.3e-17 94.7 465 25.2
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 6.7e-17 93.2 119 44.5
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 5.0e-12 77.0 235 31.1
PRCOL_00001307 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 8.8e-09 66.2 341 25.5
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.4e-06 58.9 408 21.3
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 1.8e-06 58.5 51 54.9
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 5.3e-06 57.0 44 61.4
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 5.3e-06 57.0 218 23.9
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 7.0e-06 56.6 218 25.2
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 9.1e-06 56.2 218 24.3


User provided reference genes

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