Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 0.0e+00 1461.8 1182 100.0
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 0.0e+00 1403.7 1199 91.3
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 0.0e+00 1112.1 1190 75.5
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 0.0e+00 1108.6 1188 79.7
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 1.2e-284 983.8 1188 71.4
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 8.6e-280 967.6 1190 70.4
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 4.3e-247 859.0 748 86.0
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 1.2e-159 568.5 1241 50.0
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 4.4e-151 540.0 1205 49.1
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 4.9e-142 510.0 1210 51.6
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 8.4e-142 509.2 1181 49.3
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 3.2e-141 507.3 1218 52.6
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 2.7e-140 504.2 1216 52.1
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 1.0e-139 502.3 833 64.5
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 2.1e-137 494.6 842 65.2
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 1.4e-136 491.9 1156 53.6
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 1.5e-135 488.4 1209 51.3
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 2.0e-135 488.0 831 65.5
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 3.2e-133 480.7 842 65.6
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 1.2e-132 478.8 1266 49.0
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 2.3e-131 474.6 1235 44.1
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 3.9e-131 473.8 827 69.8
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 1.1e-130 472.2 811 70.5
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 2.1e-129 468.0 832 70.2
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 3.7e-129 467.2 832 69.8
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 6.2e-129 466.5 854 50.6
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 8.1e-129 466.1 843 61.2
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 1.4e-128 465.3 812 69.1
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 1.8e-128 464.9 827 66.1
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 2.4e-128 464.5 766 65.1
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 3.1e-128 464.2 832 69.7
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 1.7e-126 458.4 1208 52.2
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 3.8e-126 457.2 841 63.3
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 1.4e-125 455.3 707 69.7
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.4e-125 455.3 707 71.3
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 2.5e-125 454.5 851 57.3
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 4.2e-125 453.8 762 67.3
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 9.3e-125 452.6 820 68.7
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 2.1e-124 451.4 764 58.2
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.5e-124 450.7 801 69.7
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 7.9e-124 449.5 838 68.3
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.0e-123 449.1 803 71.2
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 2.3e-123 448.0 829 68.9
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.3e-123 448.0 801 69.5
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 3.0e-123 447.6 858 56.9
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 5.1e-123 446.8 709 74.9
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 6.7e-123 446.4 1190 53.4
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 1.5e-122 445.3 809 64.5
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 3.3e-122 444.1 731 68.5
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 4.3e-122 443.7 861 65.7
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 7.4e-122 443.0 813 64.6
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 2.1e-121 441.4 829 68.8
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 6.2e-121 439.9 823 57.6
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 6.2e-121 439.9 714 76.1
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 1.1e-120 439.1 1284 42.4
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 1.8e-120 438.3 837 68.7
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 4.0e-120 437.2 1218 47.7
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 2.9e-118 431.0 1263 42.6
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 2.5e-117 427.9 706 76.8
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 2.1e-116 424.9 706 76.8
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 2.1e-116 424.9 860 61.9
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 7.9e-116 422.9 702 70.4
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 1.3e-115 422.2 802 68.7
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 1.8e-115 421.8 693 76.6
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 1.9e-114 418.3 700 70.1
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 3.3e-114 417.5 693 76.8
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 1.3e-113 415.6 703 66.9
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 1.6e-113 415.2 821 60.2
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.7e-113 414.1 744 71.2
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 4.1e-112 410.6 818 62.2
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 6.9e-112 409.8 693 77.1
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 1.0e-110 406.0 828 66.2
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 2.2e-110 404.8 828 66.3
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 2.2e-110 404.8 737 72.3
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 2.9e-110 404.4 822 66.9
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 5.0e-110 403.7 826 60.9
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 6.5e-110 403.3 831 61.6
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 6.5e-110 403.3 828 66.1
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 1.4e-109 402.1 684 66.4
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 1.6e-108 398.7 818 54.8
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 2.1e-108 398.3 828 61.1
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 1.8e-107 395.2 1229 43.4
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 1.5e-106 392.1 824 66.1
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 2.0e-106 391.7 902 61.9
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 8.2e-105 386.3 746 70.4
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 2.2e-102 378.3 271 69.0
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 4.7e-100 370.5 1217 46.8
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 6.7e-99 366.7 830 63.9
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 3.1e-96 357.8 722 65.1
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.5e-95 355.5 723 64.9
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 7.7e-95 353.2 806 57.1
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 6.7e-91 340.1 786 46.8
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 1.5e-85 322.4 779 51.1
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 2.8e-81 308.1 759 54.9
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.1e-80 306.2 758 55.8
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 1.0e-75 289.7 259 56.0
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.2e-74 286.2 731 69.5
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.3e-57 229.6 163 69.9
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.3e-53 214.9 123 87.0
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 2.9e-49 201.8 518 63.1
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 7.8e-47 193.7 794 40.4
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 3.6e-44 184.9 690 63.9
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.7e-41 176.0 705 51.6
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.9e-40 172.6 247 41.7
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 3.5e-39 168.3 262 38.9
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.3e-38 166.4 694 62.8
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 2.3e-38 165.6 761 58.6
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.2e-34 153.3 695 62.0
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 3.2e-32 145.2 390 57.4
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.7e-31 142.1 307 67.1
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 3.5e-31 141.7 128 57.0
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 4.3e-29 134.8 212 40.6
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 5.6e-29 134.4 276 34.8
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 9.6e-29 133.7 107 58.9
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 4.8e-28 131.3 666 56.6
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.1e-27 130.2 100 60.0
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.1e-27 130.2 119 55.5
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 1.3e-25 123.2 217 86.2
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.7e-25 122.9 124 53.2
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 4.9e-25 121.3 94 59.6
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.9e-21 109.4 93 53.8
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 3.0e-14 85.5 258 29.5


User provided reference genes

Program Settings