Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g052310 Solanum pennellii HOM05D007387 ORTHO05D009321 8.0e-90 334.0 196 100.0
Solyc01g110150.2 Solanum lycopersicum HOM05D007387 ORTHO05D009321 2.7e-85 318.9 197 95.4
PGSC0003DMG400030970 Solanum tuberosum HOM05D007387 ORTHO05D009321 9.2e-78 293.9 196 87.2
CAN.G170.83 Capsicum annuum HOM05D007387 ORTHO05D009321 8.9e-65 250.8 195 74.9
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.5e-45 185.7 209 56.0
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.5e-43 180.3 221 54.8
Peaxi162Scf00016g00025 Petunia axillaris HOM05D007387 ORTHO05D009321 5.3e-33 145.2 237 48.5
Peaxi162Scf00003g00073 Petunia axillaris HOM05D007387 ORTHO05D009321 2.4e-25 119.8 197 42.1
Cc02_g17100 Coffea canephora HOM05D007387 ORTHO05D009321 4.9e-23 112.1 211 45.0
Oeu055620.1 Olea europaea HOM05D007387 ORTHO05D009321 8.7e-20 101.3 180 38.3
Oeu008575.1 Olea europaea HOM05D007387 ORTHO05D009321 1.1e-19 100.9 184 40.2
Actinidia00563 Actinidia chinensis HOM05D001785 ORTHO05D001933 1.5e-19 100.5 170 40.0
vmacro02067 Vaccinium macrocarpon HOM05D007387 ORTHO05D009321 4.8e-18 95.5 178 46.6
Actinidia11742 Actinidia chinensis HOM05D007387 ORTHO05D009321 3.1e-17 92.8 168 42.9
Eucgr.I01309 Eucalyptus grandis HOM05D007387 ORTHO05D009321 9.0e-17 91.3 55 70.9
HanXRQChr16g0505141 Helianthus annuus HOM05D007387 ORTHO05D009321 1.2e-16 90.9 192 42.7
Cpa.g.sc139.28 Carica papaya HOM05D007387 ORTHO05D009321 1.5e-16 90.5 169 43.8
Dinv42018 Davidia involucrata HOM05D007387 ORTHO05D009321 4.5e-16 89.0 55 69.1
PGR142G2532 Punica granatum HOM05D007387 ORTHO05D009321 1.0e-15 87.8 165 42.4
HanXRQChr04g0127721 Helianthus annuus HOM05D007387 ORTHO05D009321 1.3e-15 87.4 204 35.3
Thecc.02G078400 Theobroma cacao HOM05D007387 ORTHO05D009321 5.0e-15 85.5 196 39.8
Lsat_1_v5_gn_7_91901 Lactuca sativa HOM05D007387 ORTHO05D009321 8.5e-15 84.7 193 41.5
Gohir.A04G124100 Gossypium hirsutum HOM05D007387 ORTHO05D009321 1.1e-14 84.3 55 67.3
THA.LOC104807296 Tarenaya hassleriana HOM05D007387 ORTHO05D009321 1.4e-14 84.0 192 46.4
Gohir.D04G166200 Gossypium hirsutum HOM05D007387 ORTHO05D009321 3.2e-14 82.8 55 67.3
Gorai.012G154600 Gossypium raimondii HOM05D007387 ORTHO05D009321 3.2e-14 82.8 55 67.3
Phvul.011G041100 Phaseolus vulgaris HOM05D007387 ORTHO05D009321 3.2e-14 82.8 165 40.0
Lj3g0012874 Lotus japonicus HOM05D007387 ORTHO05D009321 5.5e-14 82.0 55 65.5
Duzib132G0100 Durio zibethinus HOM05D007387 ORTHO05D009321 7.2e-14 81.6 173 36.4
ECA236G2541 Erigeron canadensis HOM05D007387 ORTHO05D009321 7.2e-14 81.6 55 63.6
VMungo1127G0459 Vigna mungo HOM05D007387 ORTHO05D009321 7.2e-14 81.6 55 67.3
Lalb_Chr03g0025431 Lupinus albus HOM05D007387 ORTHO05D009321 1.6e-13 80.5 55 61.8
Glyma.12G039000 Glycine max HOM05D007387 ORTHO05D009321 2.1e-13 80.1 55 67.3
Ciclev10029309m.g Citrus clementina HOM05D007387 ORTHO05D009321 3.6e-13 79.3 174 37.9
arahy.Tifrunner.gnm1.ann1.WH0Y0U Arachis hypogaea HOM05D007387 ORTHO05D009321 4.6e-13 79.0 55 61.8
Ca_20916_v3 Cicer arietinum L. HOM05D007387 ORTHO05D009321 4.6e-13 79.0 55 63.6
Medtr4g071120 Medicago truncatula HOM05D007387 ORTHO05D009321 4.6e-13 79.0 55 65.5
ClCG02G004690 Citrullus lanatus HOM05D007387 ORTHO05D009321 6.1e-13 78.6 55 63.6
MELO3C013435.2 Cucumis melo HOM05D007387 ORTHO05D009321 6.1e-13 78.6 55 63.6
CsaV3_7G000220 Cucumis sativus L. HOM05D007387 ORTHO05D009321 6.1e-13 78.6 55 63.6
MD05G1058600 Malus domestica HOM05D007387 ORTHO05D009321 6.1e-13 78.6 55 63.6
Atru.chr5.3107 Acer truncatum HOM05D007387 ORTHO05D009321 1.0e-12 77.8 55 60.0
Glyma.11G113100 Glycine max HOM05D007387 ORTHO05D009321 1.0e-12 77.8 55 65.5
Cfa005072 Carpinus fangiana HOM05D007387 ORTHO05D009321 1.4e-12 77.4 55 65.5
Psat7g182600 Pisum sativum HOM05D007387 ORTHO05D009321 1.4e-12 77.4 55 61.8
Prupe.8G088200 Prunus persica HOM05D007387 ORTHO05D009321 1.8e-12 77.0 170 44.1
FAN15G3112 Fragaria x ananassa HOM05D007387 ORTHO05D009321 2.3e-12 76.6 55 61.8
FAN24G0663 Fragaria x ananassa HOM05D007387 ORTHO05D009321 2.3e-12 76.6 55 61.8
MD10G1066200 Malus domestica HOM05D007387 ORTHO05D009321 2.3e-12 76.6 192 40.1
QL11p045571 Quercus lobata HOM05D007387 ORTHO05D009321 2.3e-12 76.6 54 66.7
Sabra04G0107500 Salix brachista HOM05D007387 ORTHO05D009321 3.9e-12 75.9 55 63.6
Gohir.A12G041900 Gossypium hirsutum HOM05D007387 ORTHO05D009321 5.1e-12 75.5 164 34.1
Sed0000236 Sechium edule HOM05D007387 ORTHO05D009321 5.1e-12 75.5 55 61.8
FvH4_2g10040 Fragaria vesca HOM05D007387 ORTHO05D009321 6.7e-12 75.1 55 60.0
Hma1.2p1_0066F.1_g035940 Hydrangea macrophylla HOM05D007387 ORTHO05D009321 8.8e-12 74.7 203 39.9
TWI31G1242 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 8.8e-12 74.7 167 29.9
Gohir.D12G030300 Gossypium hirsutum HOM05D007387 ORTHO05D009321 1.1e-11 74.3 165 34.5
Potri.004G160700 Populus trichocarpa HOM05D007387 ORTHO05D009321 1.1e-11 74.3 55 61.8
Sed0010335 Sechium edule HOM05D007387 ORTHO05D009321 1.1e-11 74.3 55 60.0
FAN27G1365 Fragaria x ananassa HOM05D007387 ORTHO05D009321 2.0e-11 73.6 55 58.2
RcHm_v2.0_Chr6g0266971 Rosa chinensis HOM05D007387 ORTHO05D009321 2.5e-11 73.2 55 58.2
TWI79G0383 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 2.5e-11 73.2 174 32.8
Potri.009G121700 Populus trichocarpa HOM05D007387 ORTHO05D009321 4.3e-11 72.4 200 35.5
CiPaw.06G131100 Carya illinoinensis HOM05D007387 ORTHO05D009321 9.7e-11 71.2 55 58.2
DCAR_003650 Daucus carota HOM05D007387 ORTHO05D009321 9.7e-11 71.2 55 56.4
Manes.11G087600 Manihot esculenta HOM05D007387 ORTHO05D009321 9.7e-11 71.2 200 37.5
Sc18g0005240 Simmondsia chinensis HOM05D007387 ORTHO05D009321 1.3e-10 70.9 53 56.6
TPR.G30501 Trifolium pratense HOM05D000711 ORTHO05D000545 1.7e-10 70.5 51 60.8
DCAR_009554 Daucus carota HOM05D007387 ORTHO05D009321 2.2e-10 70.1 55 58.2
Duzib248G1112 Durio zibethinus HOM05D007387 ORTHO05D009321 2.8e-10 69.7 173 37.6
Lalb_Chr19g0138881 Lupinus albus HOM05D007387 ORTHO05D009321 3.7e-10 69.3 55 54.5
Aa31LG2G15890 Aethionema arabicum HOM05D007387 ORTHO05D009321 4.8e-10 68.9 55 58.2
Sp7g32420 Schrenkiella parvula HOM05D007387 ORTHO05D009321 8.2e-10 68.2 55 54.5
CARHR106690 Cardamine hirsuta HOM05D007387 ORTHO05D009321 1.4e-09 67.4 56 57.1
Actinidia12738 Actinidia chinensis HOM05D007387 ORTHO05D009321 2.4e-09 66.6 57 59.6
Actinidia27864 Actinidia chinensis HOM05D007387 ORTHO05D009321 2.4e-09 66.6 57 59.6
Sabra09G0094000 Salix brachista HOM05D007387 ORTHO05D009321 3.1e-09 66.2 201 33.3
TWI75G1034 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 4.1e-09 65.9 51 52.9
A01p03860 Brassica napus HOM05D007387 ORTHO05D009321 1.2e-08 64.3 51 58.8
CARHR242940 Cardamine hirsuta HOM05D007387 ORTHO05D009321 1.2e-08 64.3 202 33.2
Thhalv10026183m.g Eutrema salsugineum HOM05D007387 ORTHO05D009321 1.5e-08 63.9 55 54.5
arahy.Tifrunner.gnm1.ann1.TWZZ0X Arachis hypogaea HOM05D007387 ORTHO05D009321 3.4e-08 62.8 155 43.9
CANSAT11G0211 Cannabis sativa HOM05D007387 ORTHO05D009321 3.4e-08 62.8 180 40.0
EL10Ac9g21673 Beta vulgaris HOM05D007387 ORTHO05D009321 4.5e-08 62.4 52 63.5
Migut.B00194 Erythranthe guttata HOM05D007387 ORTHO05D009321 5.9e-08 62.0 176 31.8
Ah.01g018920 Amaranthus hybridus HOM05D001785 ORTHO05D001933 1.0e-07 61.2 55 47.3
AL7G16570 Arabidopsis lyrata HOM05D007387 ORTHO05D009321 1.0e-07 61.2 56 55.4
BcaNung04916 Brassica carinata HOM05D007387 ORTHO05D009321 1.0e-07 61.2 56 51.8
BcaNung04919 Brassica carinata HOM05D007387 ORTHO05D009321 1.0e-07 61.2 56 51.8
AL3G52630 Arabidopsis lyrata HOM05D007387 ORTHO05D009321 2.9e-07 59.7 54 57.4
Carub.0007s0565 Capsella rubella HOM05D007387 ORTHO05D009321 1.1e-06 57.8 195 30.3
BcaNung00681 Brassica carinata HOM05D007387 ORTHO05D009321 3.2e-06 56.2 190 29.5
C01p04170 Brassica napus HOM05D007387 ORTHO05D009321 3.2e-06 56.2 190 29.5
BolC1t00405H Brassica oleracea HOM05D007387 ORTHO05D009321 3.2e-06 56.2 190 29.5
AT4G34630 Arabidopsis thaliana HOM05D007387 ORTHO05D009321 5.5e-06 55.5 50 56.0


User provided reference genes

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