Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 2.9e-227 791.6 409 100.0
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.4e-216 756.1 409 95.8
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.8e-192 676.0 417 86.3
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 2.4e-144 516.2 436 67.7
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.3e-115 419.9 456 53.9
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 5.7e-114 415.2 452 54.4
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 1.8e-112 410.2 452 53.3
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 4.1e-112 409.1 452 54.0
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 7.0e-112 408.3 502 48.6
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 3.5e-111 406.0 452 53.3
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 4.5e-111 405.6 448 53.6
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.2e-110 403.3 450 52.0
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.9e-110 402.9 450 52.0
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 2.5e-109 399.8 450 51.8
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 3.2e-109 399.4 450 51.3
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 4.2e-109 399.1 466 49.6
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 5.5e-109 398.7 450 52.0
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 7.2e-109 398.3 450 51.3
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 9.4e-109 397.9 465 51.0
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 3.6e-108 396.0 463 51.4
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 4.7e-108 395.6 450 50.9
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 6.1e-108 395.2 444 52.3
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 8.0e-108 394.8 391 57.0
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 1.0e-107 394.4 450 50.9
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.0e-107 392.9 510 48.0
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 5.2e-107 392.1 449 51.2
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 5.2e-107 392.1 451 50.6
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 6.8e-107 391.7 440 52.3
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 8.8e-107 391.3 474 48.7
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 1.2e-106 391.0 440 51.4
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.5e-106 390.6 450 50.2
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 9.7e-106 387.9 447 50.3
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 9.7e-106 387.9 447 50.3
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 1.3e-105 387.5 440 51.4
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 2.2e-105 386.7 450 50.7
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.2e-105 386.7 446 49.6
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.8e-105 386.3 446 49.3
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 3.7e-105 386.0 450 51.1
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 3.7e-105 386.0 446 49.6
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 8.3e-105 384.8 450 48.9
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.1e-104 384.4 440 50.7
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 1.1e-104 384.4 451 49.2
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 1.4e-104 384.0 453 48.8
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 1.8e-104 383.6 438 50.9
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.8e-104 383.6 469 47.5
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 1.8e-104 383.6 450 49.3
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 5.3e-104 382.1 450 48.9
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 7.0e-104 381.7 471 48.4
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 7.0e-104 381.7 450 48.9
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 2.7e-103 379.8 446 49.6
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 2.7e-103 379.8 450 49.6
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 3.5e-103 379.4 437 50.6
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 3.5e-103 379.4 469 47.1
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 7.7e-103 378.3 444 50.7
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.3e-102 377.5 450 47.8
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 2.2e-102 376.7 450 48.7
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 2.2e-102 376.7 450 49.6
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 2.2e-102 376.7 453 49.7
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 2.2e-102 376.7 454 48.2
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 2.9e-102 376.3 440 50.5
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.5e-102 375.2 472 53.0
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 1.5e-101 374.0 446 48.9
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 1.5e-101 374.0 440 50.5
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 1.9e-101 373.6 440 50.9
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.9e-101 373.6 438 49.1
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 2.5e-101 373.2 446 48.7
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 5.5e-101 372.1 446 48.7
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 9.4e-101 371.3 440 49.1
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 9.4e-101 371.3 440 49.1
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 9.4e-101 371.3 440 49.3
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.6e-100 370.5 440 50.0
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 2.7e-100 369.8 442 49.1
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 2.7e-100 369.8 440 48.4
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 3.6e-100 369.4 439 49.4
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 3.6e-100 369.4 455 48.8
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.7e-100 369.0 464 47.4
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 6.1e-100 368.6 446 49.1
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 6.1e-100 368.6 422 50.2
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 8.0e-100 368.2 440 49.5
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 1.4e-99 367.5 441 48.8
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 2.3e-99 366.7 440 49.3
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 2.3e-99 366.7 465 49.7
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 4.0e-99 365.9 446 48.9
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 4.0e-99 365.9 440 49.3
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 5.2e-99 365.5 440 49.3
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 5.2e-99 365.5 440 49.3
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 2.0e-98 363.6 436 49.1
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 2.0e-98 363.6 457 47.9
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 7.5e-98 361.7 417 50.4
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 1.3e-97 360.9 436 49.8
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 2.2e-97 360.1 439 49.7
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 2.8e-97 359.8 448 48.9
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 3.7e-97 359.4 406 51.0
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 8.3e-97 358.2 469 46.1
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.8e-96 357.1 429 49.4
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 3.1e-96 356.3 463 46.4
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 4.1e-96 355.9 441 51.9
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 4.5e-95 352.4 417 49.4
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 6.6e-94 348.6 464 45.7
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 9.5e-93 344.7 440 47.7
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.4e-91 340.9 450 45.8
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 5.2e-91 339.0 541 41.6
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 1.2e-87 327.8 466 44.4
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.8e-83 313.9 373 49.3
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.2e-80 303.1 256 63.7
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 9.2e-80 301.6 254 63.0
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.9e-77 293.9 449 40.5
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 4.3e-77 292.7 444 46.8
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 7.3e-77 292.0 436 41.3
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 6.0e-71 272.3 386 45.9
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 9.5e-69 265.0 435 38.9
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 1.2e-66 258.1 451 39.0
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 7.6e-66 255.4 432 38.4
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 1.9e-56 224.2 443 34.1
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 3.9e-54 216.5 170 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.0e-46 191.8 284 40.5
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 3.3e-45 186.8 509 30.8
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 7.9e-39 165.6 484 28.3
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 6.2e-36 156.0 150 58.0
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 2.6e-26 124.0 100 64.0
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 7.2e-24 115.9 90 65.6
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 7.9e-23 112.5 481 26.0
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 6.7e-22 109.4 129 45.7
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 3.2e-16 90.5 108 45.4
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 2.1e-15 87.8 83 55.4
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.7e-15 87.4 136 38.2
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 1.1e-13 82.0 101 45.5
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.0e-09 68.9 57 59.6
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 8.5e-09 65.9 129 38.0


User provided reference genes

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