Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g109130.3 Solanum lycopersicum HOM05D005925 ORTHO05D007270 7.8e-163 577.0 281 100.0
Sopen01g051330 Solanum pennellii HOM05D005925 ORTHO05D007270 7.8e-163 577.0 281 100.0
PGSC0003DMG400025833 Solanum tuberosum HOM05D005925 ORTHO05D007270 1.3e-154 549.7 281 96.4
CAN.G322.90 Capsicum annuum HOM05D005925 ORTHO05D007270 7.3e-153 543.9 281 91.8
Peaxi162Scf00016g01229 Petunia axillaris HOM05D005925 ORTHO05D007270 9.6e-145 516.9 281 87.5
Nitab4.5_0012894g0020 Nicotiana tabacum HOM05D005925 ORTHO05D007270 2.8e-144 515.4 291 86.6
Oeu034077.1 Olea europaea HOM05D005925 ORTHO05D007270 1.1e-121 440.3 281 72.6
HanXRQChr10g0307581 Helianthus annuus HOM05D005925 ORTHO05D007270 1.0e-117 427.2 282 70.6
vmacro22671 Vaccinium macrocarpon HOM05D005925 ORTHO05D007270 4.9e-117 424.9 282 70.9
Nitab4.5_0008189g0020 Nicotiana tabacum HOM05D005925 ORTHO05D007270 6.5e-117 424.5 287 74.6
Migut.N01222 Erythranthe guttata HOM05D005925 ORTHO05D007270 1.9e-116 422.9 281 70.1
Lsat_1_v5_gn_5_117341 Lactuca sativa HOM05D005925 ORTHO05D007270 9.3e-116 420.6 282 70.6
Cfa004956 Carpinus fangiana HOM05D005925 ORTHO05D007270 2.1e-115 419.5 282 70.9
Actinidia17837 Actinidia chinensis HOM05D005925 ORTHO05D007270 6.0e-115 417.9 282 69.5
CiPaw.05G059200 Carya illinoinensis HOM05D005925 ORTHO05D007270 7.9e-115 417.5 282 70.6
Cc02_g18140 Coffea canephora HOM05D005925 ORTHO05D007270 5.1e-114 414.8 281 69.8
Duzib248G1621 Durio zibethinus HOM05D005925 ORTHO05D007270 6.7e-114 414.5 282 70.9
FvH4_5g27360 Fragaria vesca HOM05D005925 ORTHO05D007270 1.1e-113 413.7 283 69.6
Thecc.02G029300 Theobroma cacao HOM05D005925 ORTHO05D007270 1.1e-113 413.7 282 70.9
GSVIVG01031883001 Vitis vinifera HOM05D005925 ORTHO05D007270 1.9e-113 412.9 283 71.4
SalBow1G0951 Salvia bowleyana HOM05D005925 ORTHO05D007270 3.3e-113 412.1 281 70.5
DCAR_003633 Daucus carota HOM05D005925 ORTHO05D007270 4.3e-113 411.8 285 70.2
Manes.17G097200 Manihot esculenta HOM05D005925 ORTHO05D007270 4.3e-113 411.8 282 70.2
Gorai.005G263900 Gossypium raimondii HOM05D005925 ORTHO05D007270 3.7e-112 408.7 282 70.9
Rhsim05G0078300 Rhododendron simsii HOM05D005925 ORTHO05D007270 3.7e-112 408.7 282 68.8
FAN08G3356 Fragaria x ananassa HOM05D005925 ORTHO05D007270 6.3e-112 407.9 294 67.3
Gohir.D02G235800 Gossypium hirsutum HOM05D005925 ORTHO05D007270 8.2e-112 407.5 282 70.6
Sc14g0001730 Simmondsia chinensis HOM05D005925 ORTHO05D007270 8.2e-112 407.5 283 68.6
FAN04G2258 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.8e-111 406.4 294 67.0
SalBow3G3631 Salvia bowleyana HOM05D005925 ORTHO05D007270 3.1e-111 405.6 281 69.4
MSTRG.27750 Avicennia marina HOM05D005925 ORTHO05D007270 4.1e-111 405.2 281 67.6
Gohir.A03G214300 Gossypium hirsutum HOM05D005925 ORTHO05D007270 6.9e-111 404.4 282 70.2
QL11p039405 Quercus lobata HOM05D005925 ORTHO05D007270 6.9e-111 404.4 281 69.8
CANSAT25G2034 Cannabis sativa HOM05D005925 ORTHO05D007270 2.6e-110 402.5 283 66.8
TAR628G0202 Trochodendron aralioides HOM05D005925 ORTHO05D007270 2.6e-110 402.5 282 69.9
ECA234G0394 Erigeron canadensis HOM05D005925 ORTHO05D000001 3.4e-110 402.1 271 68.3
Hund00298 Selenicereus undatus HOM05D005925 ORTHO05D007270 3.4e-110 402.1 283 67.1
Hund00305 Selenicereus undatus HOM05D005925 ORTHO05D007270 3.4e-110 402.1 283 67.1
Prupe.8G110200 Prunus persica HOM05D005925 ORTHO05D007270 7.6e-110 401.0 283 68.9
RcHm_v2.0_Chr6g0261021 Rosa chinensis HOM05D005925 ORTHO05D007270 2.9e-109 399.1 283 68.6
MD10G1085900 Malus domestica HOM05D005925 ORTHO05D007270 5.0e-109 398.3 283 68.6
TWI31G0896 Tripterygium wilfordii HOM05D005925 ORTHO05D007270 8.5e-109 397.5 282 68.4
Potri.004G148500 Populus trichocarpa HOM05D005925 ORTHO05D007270 1.1e-108 397.1 282 69.1
Potri.004G148700 Populus trichocarpa HOM05D005925 ORTHO05D007270 1.1e-108 397.1 282 69.1
Eucgr.I01229 Eucalyptus grandis HOM05D005925 ORTHO05D007270 3.2e-108 395.6 282 68.4
CsaV3_7G010150 Cucumis sativus L. HOM05D005925 ORTHO05D007270 2.1e-107 392.9 282 68.4
SGA_v2.0_scaffold55G19820 Striga asiatica HOM05D005925 ORTHO05D007270 2.1e-107 392.9 281 66.5
Ciclev10029009m.g Citrus clementina HOM05D005925 ORTHO05D007270 2.3e-106 389.4 282 67.0
Aqoxy5G01754 Aquilegia oxysepala HOM05D005925 ORTHO05D007270 3.0e-106 389.0 281 69.0
Lj3g0007485 Lotus japonicus HOM05D005925 ORTHO05D007270 6.7e-106 387.9 282 65.6
Glyma.11G122900 Glycine max HOM05D005925 ORTHO05D007270 8.7e-106 387.5 283 66.1
PGR142G0964 Punica granatum HOM05D005925 ORTHO05D007270 8.7e-106 387.5 282 66.7
Lalb_Chr01g0002931 Lupinus albus HOM05D005925 ORTHO05D007270 2.5e-105 386.0 282 65.6
Ah.01g019810 Amaranthus hybridus HOM05D005925 ORTHO05D007270 3.3e-105 385.6 284 67.6
COL.COLO4_17783 Corchorus olitorius HOM05D005925 ORTHO05D007270 9.7e-105 384.0 274 66.8
MELO3C018414.2 Cucumis melo HOM05D005925 ORTHO05D007270 9.7e-105 384.0 282 66.7
VMungo1127G2028 Vigna mungo HOM05D005925 ORTHO05D007270 1.6e-104 383.3 282 63.8
Glyma.12G047700 Glycine max HOM05D005925 ORTHO05D007270 2.2e-104 382.9 282 65.2
Phvul.011G049700 Phaseolus vulgaris HOM05D005925 ORTHO05D007270 3.7e-104 382.1 282 64.2
QL09p038983 Quercus lobata HOM05D005925 ORTHO05D007270 3.7e-104 382.1 261 70.9
Sed0018300 Sechium edule HOM05D005925 ORTHO05D007270 6.3e-104 381.3 282 67.0
ClCG02G005470 Citrullus lanatus HOM05D005925 ORTHO05D007270 8.2e-104 380.9 290 65.2
Lj9C365T5 Lonicera japonica HOM05D005925 ORTHO05D007270 2.4e-103 379.4 255 70.2
Medtr4g068475 Medicago truncatula HOM05D005925 ORTHO05D007270 9.1e-103 377.5 283 63.3
THA.LOC104803449 Tarenaya hassleriana HOM05D005925 ORTHO05D007270 1.2e-102 377.1 282 64.5
AT3G18940 Arabidopsis thaliana HOM05D005925 ORTHO05D007270 1.5e-102 376.7 282 64.9
A05p30640 Brassica napus HOM05D005925 ORTHO05D007270 1.5e-102 376.7 282 64.5
Ca_20823_v3 Cicer arietinum L. HOM05D005925 ORTHO05D007270 2.6e-102 375.9 283 63.6
CARHR094360 Cardamine hirsuta HOM05D005925 ORTHO05D007270 3.4e-102 375.6 282 64.2
Psat7g207080 Pisum sativum HOM05D005925 ORTHO05D007270 5.9e-102 374.8 283 63.3
Thhalv10021280m.g Eutrema salsugineum HOM05D005925 ORTHO05D007270 1.3e-101 373.6 282 64.5
Carub.0003s1876 Capsella rubella HOM05D005925 ORTHO05D007270 1.7e-101 373.2 282 64.2
PSO170G4903 Papaver somniferum HOM05D005925 ORTHO05D007270 2.2e-101 372.9 283 64.0
TPR.G10224 Trifolium pratense HOM05D005925 ORTHO05D007270 8.5e-101 370.9 283 61.8
ATR0733G151 Amborella trichopoda HOM05D005925 ORTHO05D007270 1.1e-100 370.5 282 61.7
PSO700G0338 Papaver somniferum HOM05D005925 ORTHO05D007270 1.1e-100 370.5 283 64.0
Sp3g17030 Schrenkiella parvula HOM05D005925 ORTHO05D007270 1.4e-100 370.2 282 63.5
AL3G32330 Arabidopsis lyrata HOM05D005925 ORTHO05D007270 5.5e-100 368.2 282 63.5
arahy.Tifrunner.gnm1.ann1.JZQ5CR Arachis hypogaea HOM05D005925 ORTHO05D007270 7.2e-100 367.9 283 63.6
Hma1.2p1_0584F.1_g183295 Hydrangea macrophylla HOM05D005925 ORTHO05D007270 2.7e-99 365.9 248 69.4
C05p46520 Brassica napus HOM05D005925 ORTHO05D007270 3.6e-99 365.5 282 63.1
BcaB06g25946 Brassica carinata HOM05D005925 ORTHO05D007270 7.9e-99 364.4 282 62.4
Aa31LG8G5780 Aethionema arabicum HOM05D005925 ORTHO05D007270 1.4e-98 363.6 282 64.5
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.4e-98 363.6 273 66.3
A03p40910 Brassica napus HOM05D005925 ORTHO05D007270 3.0e-98 362.5 283 62.9
BraA03t13250Z Brassica rapa HOM05D005925 ORTHO05D007270 3.0e-98 362.5 283 62.9
arahy.Tifrunner.gnm1.ann1.EU6551 Arachis hypogaea HOM05D005925 ORTHO05D007270 3.9e-98 362.1 283 63.3
CDE01G0621 Ceratophyllum demersum HOM05D005925 ORTHO05D007270 3.9e-98 362.1 281 65.1
unitig_8.g3429 Utricularia gibba HOM05D005925 ORTHO05D007270 2.6e-97 359.4 261 64.8
Sabra04G0098600 Salix brachista HOM05D005925 ORTHO05D007270 3.7e-96 355.5 353 54.4
MBI16_g31334_MAGBIO Magnolia biondii HOM05D005925 ORTHO05D007270 8.5e-93 344.4 310 57.7
Haze_02451 Corylus avellana HOM05D005925 ORTHO05D007270 3.2e-92 342.4 272 63.6
EL10Ac9g21785 Beta vulgaris HOM05D005925 ORTHO05D007270 5.5e-92 341.7 258 63.2
Nn6g32156 Nelumbo nucifera HOM05D005925 ORTHO05D007270 2.1e-91 339.7 256 66.0
SGA_v2.0_scaffold13G06566 Striga asiatica HOM05D005925 ORTHO05D007270 7.9e-91 337.8 261 62.8
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.4e-90 337.0 262 64.9
Actinidia27921 Actinidia chinensis HOM05D005925 ORTHO05D007270 2.0e-89 333.2 281 61.6
AUR62011394 Chenopodium quinoa HOM05D005925 ORTHO05D007270 2.0e-89 333.2 251 65.3
Os03g0766900 Oryza sativa ssp. japonica HOM05D005925 ORTHO05D007270 8.2e-88 327.8 282 57.1
Dinv23574 Davidia involucrata HOM05D005925 ORTHO05D007270 2.2e-85 319.7 207 72.9
Zm00001eb058630 Zea mays HOM05D005925 ORTHO05D007270 1.0e-82 310.8 262 56.9
RcHm_v2.0_Chr6g0260971 Rosa chinensis HOM05D005925 ORTHO05D007270 5.2e-82 308.5 283 56.9
FvH4_2g07422 Fragaria vesca HOM05D005925 ORTHO05D007270 2.6e-81 306.2 253 61.7
BcaB04g19013 Brassica carinata HOM05D005925 ORTHO05D007270 5.7e-81 305.1 265 59.6
BcaC01g03666 Brassica carinata HOM05D005925 ORTHO05D007270 8.2e-80 301.2 280 56.4
C03p49920 Brassica napus HOM05D005925 ORTHO05D007270 3.1e-79 299.3 240 62.5
BolC3t17285H Brassica oleracea HOM05D005925 ORTHO05D007270 3.1e-79 299.3 240 62.5
Cpa.g.sc62.88 Carica papaya HOM05D005925 ORTHO05D007270 2.9e-69 266.2 216 60.2
Pp3c2_22470 Physcomitrium patens HOM05D005925 ORTHO05D007270 5.5e-68 261.9 276 46.7
Pp3c2_22478 Physcomitrium patens HOM05D005925 ORTHO05D007270 5.5e-68 261.9 276 46.7
HPP92_015723 Vanilla planifolia HOM05D005925 ORTHO05D007270 1.8e-66 256.9 216 58.8
FAN15G3711 Fragaria x ananassa HOM05D001143 ORTHO05D001457 5.2e-66 255.4 192 66.1
Mapoly0073s0081 Marchantia polymorpha HOM05D005925 ORTHO05D007270 1.5e-57 227.3 264 45.5
FAN24G2811 Fragaria x ananassa HOM05D001143 ORTHO05D007270 2.6e-57 226.5 215 57.7
SMO115G0205 Selaginella moellendorffii HOM05D005925 ORTHO05D007270 6.4e-56 221.9 275 43.3
Haze_02453 Corylus avellana HOM05D005925 ORTHO05D007270 1.1e-50 204.5 192 56.8
Atru.chr5.2901 Acer truncatum HOM05D005925 ORTHO05D007270 2.6e-49 199.9 134 71.6
BolC5t33380H Brassica oleracea HOM05D005925 ORTHO05D007270 3.3e-44 183.0 134 66.4
BraA05t21906Z Brassica rapa HOM05D005925 ORTHO05D007270 7.3e-44 181.8 134 66.4
SEGI_41274 Sequoiadendron giganteum HOM05D005925 ORTHO05D007270 6.8e-42 175.3 152 53.9
CBR_g26043 Chara braunii HOM05D005925 ORTHO05D007270 9.9e-41 171.4 359 31.5
AagrBONN_evm.TU.Sc2ySwM_228.3883 Anthoceros agrestis HOM05D005925 ORTHO05D007270 3.3e-36 156.4 183 44.3
Atru.chr5.2902 Acer truncatum HOM05D005925 ORTHO05D007270 1.5e-33 147.5 88 73.9
RcHm_v2.0_Chr7g0218511 Rosa chinensis HOM05D005925 ORTHO05D007270 2.7e-30 136.7 201 39.8
FvH4_5g16250 Fragaria vesca HOM05D005925 ORTHO05D007270 7.8e-30 135.2 95 69.5
MCO11G864 Micromonas commoda HOM05D005925 ORTHO05D007270 2.1e-27 127.1 304 32.6
SEGI_01484 Sequoiadendron giganteum HOM05D005925 ORTHO05D007270 3.6e-27 126.3 96 63.5
FAN18G0119 Fragaria x ananassa HOM05D005925 ORTHO05D007270 6.4e-24 115.5 86 66.3
SMO115G0183 Selaginella moellendorffii HOM05D005925 ORTHO05D007270 6.4e-24 115.5 165 40.6
CDE02G0959 Ceratophyllum demersum HOM05D007402 ORTHO05D003673 1.4e-23 114.4 122 53.3
FAN20G1704 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.4e-18 97.1 67 62.7
Cre09.g399589 Chlamydomonas reinhardtii HOM05D005925 ORTHO05D007270 1.6e-11 74.3 304 28.3


User provided reference genes

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