Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 3.7e-56 221.5 124 100.0
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 2.6e-54 215.3 124 97.6
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.1e-51 205.7 124 92.7
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 8.2e-48 193.7 125 90.4
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.3e-42 175.6 124 84.7
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 3.9e-42 174.9 124 83.9
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 4.1e-39 164.9 115 85.2
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.7e-37 159.5 126 76.2
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 1.1e-36 156.8 127 76.4
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 4.2e-36 154.8 120 70.8
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 1.5e-33 146.4 128 73.4
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 9.1e-31 137.1 124 69.4
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.6e-30 136.3 125 65.6
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 3.5e-30 135.2 127 65.4
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.3e-29 133.3 125 64.8
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 3.8e-29 131.7 119 63.9
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 3.8e-29 131.7 118 64.4
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 5.0e-29 131.3 125 65.6
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 1.5e-28 129.8 127 63.0
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.5e-28 129.8 125 64.0
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.9e-28 129.4 105 68.6
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 2.5e-28 129.0 127 63.8
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 2.5e-28 129.0 127 63.8
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.5e-28 129.0 125 64.0
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 3.2e-28 128.6 123 64.2
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 4.2e-28 128.3 126 62.7
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 5.5e-28 127.9 125 63.2
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 5.5e-28 127.9 124 62.1
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 5.5e-28 127.9 122 62.3
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 9.4e-28 127.1 125 62.4
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 1.2e-27 126.7 127 64.6
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.6e-27 126.3 121 64.5
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 2.1e-27 125.9 124 60.5
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 2.7e-27 125.6 127 63.0
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.6e-27 125.2 125 63.2
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 3.6e-27 125.2 121 59.5
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 3.6e-27 125.2 121 59.5
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 4.7e-27 124.8 124 60.5
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 4.7e-27 124.8 127 63.0
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 4.7e-27 124.8 123 62.6
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 4.7e-27 124.8 123 59.3
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 6.1e-27 124.4 120 64.2
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 8.0e-27 124.0 123 59.3
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 8.0e-27 124.0 127 62.2
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.0e-26 123.6 120 64.2
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.0e-26 123.6 120 64.2
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.0e-26 123.6 115 62.6
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 1.4e-26 123.2 123 63.4
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 1.8e-26 122.9 126 58.7
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 1.8e-26 122.9 121 62.8
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 2.3e-26 122.5 124 61.3
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 2.3e-26 122.5 126 62.7
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.3e-26 122.5 126 62.7
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.3e-26 122.5 120 63.3
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 2.3e-26 122.5 126 59.5
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.3e-26 122.5 123 59.3
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 2.3e-26 122.5 123 62.6
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.0e-26 122.1 123 60.2
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 3.0e-26 122.1 121 61.2
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 3.0e-26 122.1 119 63.0
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.0e-26 121.7 126 62.7
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 4.0e-26 121.7 115 59.1
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 5.2e-26 121.3 96 72.9
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 5.2e-26 121.3 113 62.8
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 5.2e-26 121.3 113 62.8
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.2e-26 121.3 125 64.0
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.2e-26 121.3 120 63.3
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.2e-26 121.3 120 63.3
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 5.2e-26 121.3 120 61.7
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 5.2e-26 121.3 117 61.5
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 5.2e-26 121.3 120 63.3
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 6.7e-26 120.9 127 61.4
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 6.7e-26 120.9 125 60.8
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 6.7e-26 120.9 124 58.1
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 6.7e-26 120.9 127 61.4
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 8.8e-26 120.6 122 59.8
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.8e-26 120.6 121 62.0
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 8.8e-26 120.6 127 61.4
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 8.8e-26 120.6 128 58.6
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.1e-25 120.2 94 72.3
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.1e-25 120.2 119 60.5
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.5e-25 119.8 125 63.2
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 1.5e-25 119.8 129 58.9
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.5e-25 119.8 124 60.5
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.6e-25 119.0 125 62.4
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 2.6e-25 119.0 119 62.2
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 3.3e-25 118.6 122 61.5
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 4.4e-25 118.2 125 62.4
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.4e-25 118.2 125 62.4
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 4.4e-25 118.2 113 60.2
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 5.7e-25 117.9 126 59.5
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 7.5e-25 117.5 124 55.6
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 1.3e-24 116.7 127 59.1
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 1.7e-24 116.3 126 58.7
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 2.2e-24 115.9 119 57.1
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 2.2e-24 115.9 127 55.9
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 2.2e-24 115.9 126 58.7
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 2.8e-24 115.5 120 55.8
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 2.8e-24 115.5 103 63.1
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 2.8e-24 115.5 125 59.2
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.8e-24 115.5 98 68.4
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 2.8e-24 115.5 126 54.8
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 4.8e-24 114.8 123 59.3
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 4.8e-24 114.8 126 59.5
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 4.8e-24 114.8 126 59.5
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 6.3e-24 114.4 125 54.4
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 8.2e-24 114.0 123 58.5
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 8.2e-24 114.0 128 54.7
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.1e-23 113.6 123 54.5
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 1.1e-23 113.6 125 54.4
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.4e-23 113.2 125 55.2
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.4e-23 113.2 125 56.8
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.4e-23 113.2 125 56.8
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.4e-23 113.2 124 56.5
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 2.4e-23 112.5 126 56.3
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 3.1e-23 112.1 126 54.8
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.1e-23 112.1 127 52.8
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 4.1e-23 111.7 122 58.2
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 1.6e-22 109.8 125 55.2
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 2.0e-22 109.4 116 56.0
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 2.0e-22 109.4 116 56.0
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 2.0e-22 109.4 116 56.0
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 2.0e-22 109.4 126 55.6
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 2.7e-22 109.0 105 60.0
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.5e-22 108.6 93 68.8
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 7.7e-22 107.5 102 61.8
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.0e-21 107.1 127 55.1
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.3e-21 106.7 126 54.8
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.3e-21 106.7 126 54.8
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.3e-21 106.7 128 53.9
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.7e-21 106.3 106 59.4
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 1.7e-21 106.3 106 58.5
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 1.7e-21 106.3 125 56.0
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.7e-21 106.3 126 55.6
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.9e-21 105.5 125 52.8
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 3.8e-21 105.1 125 52.8
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 5.0e-21 104.8 125 52.8
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 5.0e-21 104.8 124 51.6
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.1e-20 103.6 127 51.2
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 1.5e-20 103.2 125 52.8
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.5e-20 103.2 132 50.8
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 9.4e-20 100.5 128 51.6
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.6e-19 99.8 121 49.6
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 6.1e-19 97.8 121 48.8
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 4.0e-18 95.1 120 48.3
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 5.2e-18 94.7 123 50.4
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 8.8e-18 94.0 123 43.9
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 2.0e-17 92.8 103 52.4
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 7.5e-17 90.9 124 48.4
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 2.8e-16 89.0 88 56.8
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 3.7e-16 88.6 126 46.8
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 7.0e-15 84.3 125 48.8
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 2.0e-14 82.8 73 63.0
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 6.5e-13 77.8 120 46.7
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 8.5e-13 77.4 131 45.0
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 1.9e-12 76.3 79 62.0
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 5.5e-12 74.7 71 62.0
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.1e-11 72.8 105 46.7
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 4.7e-11 71.6 120 40.8
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 6.1e-11 71.2 56 73.2
CAN.G322.45 Capsicum annuum HOM05D000224 ORTHO05D000337 1.4e-10 70.1 66 63.6
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 3.4e-09 65.5 47 74.5
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 1.1e-07 60.5 105 41.9
PGSC0003DMG400025825 Solanum tuberosum HOM05D000224 ORTHO05D000337 9.2e-07 57.4 96 44.8
CAN.G820.2 Capsicum annuum HOM05D004388 ORTHO05D005106 5.9e-06 54.7 92 48.9
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 5.9e-06 54.7 108 38.9


User provided reference genes

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