Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 1.5e-273 945.7 516 100.0
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 4.6e-270 934.1 516 98.8
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 5.8e-265 917.1 516 97.5
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.6e-206 721.8 467 84.6
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 4.3e-199 698.4 465 81.9
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 2.0e-193 679.5 390 90.8
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 6.4e-187 657.9 521 72.7
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 3.4e-180 635.6 474 74.3
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 6.4e-179 631.3 474 73.8
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 3.2e-178 629.0 490 70.0
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.0e-176 624.0 485 69.9
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 5.8e-172 608.2 505 66.1
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 5.1e-168 595.1 471 67.9
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 1.1e-167 594.0 485 67.0
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 5.6e-167 591.7 489 67.7
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 2.1e-166 589.7 521 64.5
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 5.2e-165 585.1 475 67.2
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 9.0e-165 584.3 475 67.2
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 1.5e-164 583.6 525 63.0
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 7.8e-161 571.2 490 65.5
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 6.6e-160 568.2 496 64.3
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 8.7e-160 567.8 525 61.5
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 4.0e-157 558.9 490 65.1
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 4.0e-157 558.9 492 63.4
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 1.2e-156 557.4 472 65.7
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 3.4e-156 555.8 478 64.0
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 7.6e-156 554.7 469 65.7
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 1.3e-155 553.9 488 62.9
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 1.3e-155 553.9 518 60.2
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 1.3e-155 553.9 521 62.4
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 2.2e-155 553.1 469 64.0
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 8.4e-155 551.2 463 66.1
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 1.4e-154 550.4 504 60.1
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 1.9e-154 550.1 502 61.2
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 2.4e-154 549.7 521 62.6
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 5.4e-154 548.5 506 61.9
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 5.4e-154 548.5 527 60.7
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 9.3e-154 547.7 527 60.7
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 3.5e-153 545.8 510 60.6
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.3e-152 543.9 515 61.9
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 2.3e-152 543.1 521 60.8
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 1.5e-151 540.4 522 59.2
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.9e-151 540.0 515 58.6
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 3.3e-151 539.3 513 59.8
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.1e-150 536.6 521 59.9
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 2.1e-150 536.6 457 63.9
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 1.1e-149 534.3 513 60.0
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 1.1e-149 534.3 506 59.5
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 1.8e-149 533.5 514 61.3
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.4e-149 533.1 521 59.1
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 1.2e-148 530.8 521 57.6
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 1.5e-148 530.4 453 64.7
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 4.5e-148 528.9 521 59.7
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 9.9e-148 527.7 521 58.5
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 1.7e-147 526.9 572 55.2
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 2.2e-147 526.6 517 59.4
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 1.1e-146 524.2 416 66.1
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 2.4e-146 523.1 391 69.6
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 3.2e-146 522.7 472 62.3
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 5.1e-144 515.4 431 64.7
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 6.7e-144 515.0 507 59.0
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 8.7e-144 514.6 516 58.3
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 1.3e-142 510.8 522 57.5
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 1.8e-141 506.9 519 58.2
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 6.9e-141 505.0 492 59.1
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 7.6e-140 501.5 505 58.0
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 7.6e-140 501.5 505 58.0
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 1.3e-139 500.7 520 57.5
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 2.2e-139 500.0 453 63.1
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 2.1e-137 493.4 519 56.1
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 2.7e-137 493.0 518 56.2
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 3.5e-137 492.7 474 58.0
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 1.3e-136 490.7 510 56.5
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 3.0e-136 489.6 525 55.8
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.0e-136 489.6 412 63.6
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 3.9e-136 489.2 501 57.5
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 6.7e-136 488.4 515 55.7
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.1e-135 487.6 472 58.9
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 1.9e-135 486.9 480 58.5
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.3e-134 484.2 413 63.0
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 2.2e-134 483.4 501 57.1
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 1.4e-133 480.7 513 54.8
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 3.1e-133 479.6 506 54.3
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 9.0e-133 478.0 519 55.1
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 5.9e-132 475.3 516 55.0
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 1.0e-131 474.6 409 61.4
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 1.3e-131 474.2 504 56.2
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 1.7e-131 473.8 522 53.6
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 8.5e-131 471.5 516 53.3
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 8.5e-131 471.5 516 53.3
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 1.1e-130 471.1 504 55.8
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.9e-130 470.3 517 55.3
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 5.5e-130 468.8 458 57.0
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 9.4e-130 468.0 523 53.9
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 2.7e-129 466.5 533 53.7
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 1.0e-128 464.5 414 61.4
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 2.3e-128 463.4 408 61.8
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 6.3e-126 455.3 412 58.3
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 1.8e-125 453.8 427 59.0
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 5.9e-124 448.7 535 51.6
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 7.7e-124 448.4 512 52.5
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 1.0e-123 448.0 478 52.9
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 1.9e-122 443.7 389 60.9
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 4.2e-122 442.6 380 63.2
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 8.8e-120 434.9 364 64.3
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 6.3e-118 428.7 403 58.6
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 2.4e-117 426.8 395 58.5
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 2.4e-117 426.8 479 53.4
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 4.1e-109 399.4 381 56.2
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 1.2e-108 397.9 401 57.6
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 1.2e-108 397.9 547 46.1
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 1.5e-106 391.0 360 61.7
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 6.7e-104 382.1 311 69.8
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 3.3e-103 379.8 527 45.7
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 5.5e-98 362.5 315 59.4
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 1.9e-90 337.4 491 41.5
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 2.1e-89 334.0 277 64.6
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 6.1e-89 332.4 277 64.6
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 5.9e-84 315.8 474 40.5
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 6.1e-81 305.8 271 65.3
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 1.8e-80 304.3 308 56.2
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 4.0e-80 303.1 290 54.5
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.5e-79 301.2 381 52.2
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 2.1e-73 280.8 232 62.1
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 2.8e-73 280.4 503 38.2
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 8.6e-67 258.8 610 35.4
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.6e-65 253.4 322 52.5
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 1.3e-59 235.0 478 37.7
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 9.9e-55 218.8 176 62.5
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 1.2e-52 211.8 158 73.4
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 4.3e-50 203.4 183 64.5
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 5.4e-45 186.4 162 63.0
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 1.1e-40 172.2 145 65.5
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.2e-31 142.1 110 67.3
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 1.3e-30 138.7 177 53.1
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 1.2e-28 132.1 255 40.0
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 2.4e-24 117.9 108 62.0
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 2.4e-24 117.9 108 62.0
Sopen01g051070 Solanum pennellii HOM05D004816 ORTHO05D006043 9.0e-24 115.9 69 89.9
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 9.3e-21 105.9 198 38.9
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.6e-20 105.1 126 47.6
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 9.7e-18 95.9 87 63.2
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 1.3e-17 95.5 141 48.2
CAN.G322.73 Capsicum annuum HOM05D004816 ORTHO05D006043 4.8e-17 93.6 64 89.1
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 2.6e-15 87.8 108 52.8
Actinidia00469 Actinidia chinensis HOM05D004816 ORTHO05D006043 4.5e-15 87.0 75 66.7
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 6.5e-14 83.2 70 65.7
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 1.1e-13 82.4 57 64.9
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 2.5e-13 81.3 103 52.4
Psat0s2233g0240 Pisum sativum HOM05D004816 ORTHO05D006043 2.1e-12 78.2 106 39.6
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 3.6e-12 77.4 161 37.9
CSS0012251 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D006043 7.4e-10 69.7 138 45.7
Cre06.g302850 Chlamydomonas reinhardtii HOM05D004816 ORTHO05D006043 2.8e-09 67.8 243 27.6
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.1e-08 65.9 160 34.4
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.8e-08 65.1 155 34.2
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 4.5e-07 60.5 55 61.8


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