Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 1.9e-231 805.4 404 100.0
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 1.4e-229 799.3 404 98.8
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.7e-227 792.3 404 97.8
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 6.5e-219 763.8 408 94.4
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 3.3e-215 751.5 404 94.1
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 9.3e-210 733.4 405 90.9
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 4.3e-207 724.5 404 90.1
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.6e-193 679.5 418 83.7
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 2.6e-183 645.6 405 79.8
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 8.2e-182 640.6 404 79.7
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 7.7e-180 634.0 404 79.5
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 5.0e-179 631.3 404 79.7
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 7.2e-178 627.5 404 78.5
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 4.7e-177 624.8 405 77.3
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 1.0e-176 623.6 394 79.7
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.5e-175 619.8 402 77.6
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 7.5e-175 617.5 420 74.8
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 3.1e-173 612.1 436 72.2
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 4.5e-172 608.2 413 75.1
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 7.7e-172 607.4 405 76.8
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.0e-171 607.1 406 75.9
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 2.5e-170 602.4 403 76.4
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 4.2e-170 601.7 387 78.0
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 4.2e-170 601.7 389 76.6
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 1.2e-169 600.1 406 75.6
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.6e-169 599.7 408 74.3
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.0e-168 597.0 405 74.8
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 1.4e-168 596.7 405 75.1
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 1.8e-168 596.3 404 74.3
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 1.7e-166 589.7 405 74.3
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 8.3e-166 587.4 381 76.9
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.2e-164 583.6 407 72.7
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 2.7e-164 582.4 405 72.6
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 3.5e-164 582.0 405 73.3
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 4.5e-164 581.6 402 72.6
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 1.0e-163 580.5 403 73.2
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.5e-162 575.9 351 80.1
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 3.3e-162 575.5 378 75.7
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 5.6e-162 574.7 402 71.6
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 7.3e-162 574.3 405 72.1
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 7.3e-162 574.3 405 70.4
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 9.5e-162 573.9 405 70.4
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.2e-161 573.5 378 75.7
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 1.6e-161 573.2 405 71.9
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 2.1e-161 572.8 402 71.6
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 2.1e-161 572.8 406 71.9
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 3.6e-161 572.0 400 73.8
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 3.6e-161 572.0 407 72.7
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 8.0e-161 570.9 402 71.4
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 1.4e-160 570.1 404 71.5
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 1.8e-160 569.7 405 71.4
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 4.0e-160 568.5 400 71.8
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.2e-159 567.0 407 70.5
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 3.4e-159 565.5 352 79.8
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 4.4e-159 565.1 392 71.2
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 5.7e-159 564.7 401 71.3
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 5.7e-159 564.7 405 69.4
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 5.7e-159 564.7 402 70.9
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 7.5e-159 564.3 402 70.9
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 1.3e-158 563.5 404 70.3
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 2.9e-158 562.4 404 70.3
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 2.9e-158 562.4 403 68.7
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 2.9e-158 562.4 379 74.1
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 3.7e-158 562.0 407 70.5
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 4.9e-158 561.6 405 69.9
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 4.9e-158 561.6 405 69.9
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 6.4e-158 561.2 397 72.3
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 8.3e-158 560.8 402 69.2
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.1e-157 560.5 406 70.7
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 1.1e-157 560.5 428 67.5
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 4.1e-157 558.5 406 71.4
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 7.0e-157 557.8 405 69.9
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 9.2e-157 557.4 371 75.7
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.2e-156 557.0 377 73.2
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.2e-156 557.0 404 70.8
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 1.2e-156 557.0 346 76.9
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 1.6e-156 556.6 405 69.4
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 2.0e-156 556.2 352 75.9
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 2.7e-156 555.8 373 74.3
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 2.7e-156 555.8 403 70.7
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 3.5e-156 555.4 397 71.5
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 5.9e-156 554.7 402 69.4
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 1.3e-155 553.5 407 69.0
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 3.0e-155 552.4 344 76.7
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 5.0e-155 551.6 346 76.3
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 8.6e-155 550.8 344 76.2
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 1.5e-154 550.1 352 75.6
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 1.5e-154 550.1 375 72.0
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 1.5e-154 550.1 399 68.9
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 2.5e-154 549.3 380 71.1
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 1.2e-153 547.0 382 70.7
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 2.1e-153 546.2 352 75.0
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 2.8e-153 545.8 417 68.8
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 1.1e-152 543.9 430 65.6
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 1.1e-152 543.9 389 70.2
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 2.6e-151 539.3 327 81.7
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 4.4e-151 538.5 372 75.0
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 2.9e-150 535.8 403 66.0
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 8.3e-150 534.3 377 71.1
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 8.3e-150 534.3 381 69.8
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.2e-148 530.4 369 71.3
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 2.3e-147 526.2 354 72.0
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 3.0e-147 525.8 314 81.2
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 1.1e-146 523.9 359 73.0
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 5.6e-146 521.5 379 69.1
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 5.8e-143 511.5 405 68.1
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 2.4e-141 506.1 405 64.0
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 1.2e-140 503.8 380 67.9
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 1.6e-140 503.4 467 60.4
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 1.7e-139 500.0 314 79.0
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 1.7e-139 500.0 343 70.6
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.0e-135 486.5 354 70.9
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.3e-134 483.8 574 48.8
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.2e-134 483.0 292 81.2
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 4.9e-134 481.9 354 70.1
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 2.8e-129 466.1 380 61.3
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.5e-122 443.7 346 63.9
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 7.1e-117 424.9 284 73.6
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.2e-109 399.4 362 61.0
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.2e-84 317.8 194 81.4
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 1.0e-67 261.5 373 42.9
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 5.2e-67 259.2 147 80.3
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 7.5e-66 255.4 222 56.3
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 5.9e-63 245.7 292 50.7
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 2.0e-50 204.1 186 60.8
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 2.2e-49 200.7 129 73.6
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 2.3e-46 190.7 112 83.0
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.6e-44 184.5 112 79.5
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.9e-32 144.4 378 29.1
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 2.1e-31 141.0 81 77.8
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 3.3e-29 133.7 97 68.0
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 7.1e-24 115.9 66 80.3
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 4.3e-13 80.1 53 73.6
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 1.6e-12 78.2 93 49.5
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 6.4e-09 66.2 45 66.7
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 1.0e-06 58.9 39 64.1


User provided reference genes

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