Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 5.2e-139 497.7 245 100.0
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 2.7e-135 485.3 245 98.0
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 2.7e-127 458.8 234 96.6
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 6.7e-118 427.6 239 87.4
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 1.5e-114 416.4 241 85.1
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.2e-111 406.8 230 86.5
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 3.2e-104 382.1 229 81.2
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 3.4e-82 308.9 226 73.0
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 8.2e-76 287.7 229 57.2
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 2.4e-75 286.2 221 61.5
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 2.4e-75 286.2 233 56.7
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 4.1e-75 285.4 231 58.0
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 4.1e-75 285.4 198 66.2
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 6.5e-73 278.1 225 60.0
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 8.5e-73 277.7 231 55.4
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 3.2e-72 275.8 204 60.3
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 3.2e-72 275.8 209 59.3
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 2.1e-71 273.1 224 58.5
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 8.0e-71 271.2 226 56.6
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 1.0e-70 270.8 229 55.9
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 1.0e-70 270.8 228 56.1
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 1.4e-70 270.4 215 57.2
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 8.8e-70 267.7 223 57.0
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 1.2e-69 267.3 214 56.5
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.5e-69 266.9 224 56.7
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 2.0e-69 266.5 223 57.0
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 3.3e-69 265.8 225 54.2
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 4.4e-69 265.4 217 57.1
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 4.4e-69 265.4 202 61.4
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 5.7e-69 265.0 208 59.6
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 1.3e-68 263.8 205 61.0
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 2.8e-68 262.7 225 56.4
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 2.8e-68 262.7 177 67.2
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 8.2e-68 261.2 216 58.3
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 7.0e-67 258.1 238 53.4
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 3.5e-66 255.8 213 57.3
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 4.5e-66 255.4 219 55.7
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 2.2e-65 253.1 203 60.1
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 2.2e-65 253.1 187 60.4
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 2.9e-65 252.7 176 64.2
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 2.9e-65 252.7 188 60.6
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 1.1e-64 250.8 224 54.9
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 1.1e-64 250.8 214 54.2
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 1.1e-64 250.8 203 59.1
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 1.5e-64 250.4 206 56.8
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 1.9e-64 250.0 192 59.9
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.5e-64 249.6 199 59.3
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 2.5e-64 249.6 205 57.6
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 1.2e-63 247.3 204 55.4
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 3.6e-63 245.7 208 55.3
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 1.0e-62 244.2 215 53.5
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.4e-62 243.8 208 55.3
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 1.4e-62 243.8 205 54.6
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 1.8e-62 243.4 224 50.9
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 3.0e-62 242.7 202 56.9
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 3.0e-62 242.7 202 56.9
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 3.0e-62 242.7 181 61.3
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 6.8e-62 241.5 223 50.2
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 2.0e-61 240.0 175 61.7
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 7.5e-61 238.0 227 52.0
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 8.3e-60 234.6 188 56.4
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 5.4e-59 231.9 201 51.7
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 1.6e-58 230.3 192 51.6
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 2.0e-58 229.9 224 49.1
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 2.0e-58 229.9 196 53.1
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 3.5e-58 229.2 178 55.6
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 2.3e-57 226.5 157 64.3
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 2.3e-57 226.5 186 55.4
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 3.8e-57 225.7 178 55.1
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 3.8e-57 225.7 179 55.3
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 5.0e-57 225.3 200 50.0
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 8.6e-57 224.6 195 49.2
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 1.5e-56 223.8 226 44.7
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 7.2e-56 221.5 199 50.3
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 7.2e-56 221.5 239 46.0
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 1.8e-54 216.9 231 45.0
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 2.3e-54 216.5 179 50.3
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 2.3e-54 216.5 179 50.3
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 4.0e-54 215.7 248 51.2
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 1.5e-53 213.8 175 50.9
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 5.7e-53 211.8 209 44.5
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 7.5e-53 211.5 159 61.0
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 3.7e-52 209.1 224 43.8
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 3.7e-52 209.1 224 43.8
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 6.3e-52 208.4 218 43.1
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 1.1e-51 207.6 181 49.2
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 1.4e-51 207.2 189 51.9
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 4.1e-51 205.7 170 53.5
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 5.4e-51 205.3 170 52.9
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 9.2e-51 204.5 181 51.4
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 1.2e-42 177.6 172 49.4
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.7e-41 173.7 194 46.4
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 2.8e-39 166.4 146 54.8
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 2.0e-37 160.2 182 40.1
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 2.9e-36 156.4 136 53.7
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 6.4e-36 155.2 120 60.0
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 1.7e-33 147.1 136 50.7
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 6.2e-31 138.7 129 51.9
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 1.2e-29 134.4 162 42.6
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 4.3e-24 115.9 143 37.1
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.2e-23 114.4 136 40.4
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 7.6e-21 105.1 78 59.0
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.9e-20 103.2 77 53.2
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.2e-19 99.8 77 53.2
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 6.0e-18 95.5 84 53.6
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 1.1e-16 91.3 84 52.4
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 1.9e-16 90.5 137 35.8
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 3.3e-16 89.7 172 31.4
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 8.1e-15 85.1 176 30.1
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 4.0e-14 82.8 165 28.5
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 4.0e-14 82.8 181 28.2
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 6.9e-14 82.0 164 30.5
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 9.0e-14 81.6 177 27.1
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 9.0e-14 81.6 167 28.7
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 2.6e-13 80.1 62 61.3
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 9.9e-13 78.2 110 40.9
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 1.3e-12 77.8 176 29.5
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 2.9e-12 76.6 186 27.4
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 8.4e-12 75.1 140 27.9
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 1.4e-11 74.3 169 29.6
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 4.2e-11 72.8 158 28.5
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 4.2e-11 72.8 162 26.5
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 5.4e-11 72.4 106 37.7
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 5.4e-11 72.4 134 27.6
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 7.1e-11 72.0 182 22.5
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 9.3e-11 71.6 140 29.3
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 9.3e-11 71.6 162 26.5
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.2e-10 71.2 140 29.3
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 1.6e-10 70.9 209 23.9
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 1.0e-09 68.2 155 29.0
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 2.3e-09 67.0 158 26.6
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.1e-08 64.7 162 25.9
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 1.5e-08 64.3 148 26.4
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.5e-08 63.5 103 36.9
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 2.5e-08 63.5 159 22.6
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.6e-07 60.8 35 65.7
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 2.1e-07 60.5 134 28.4
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 2.1e-07 60.5 139 28.1
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 6.2e-07 58.9 109 26.6
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.8e-06 57.4 120 27.5


User provided reference genes

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