Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 2107.4 1073 100.0
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 2098.6 1073 99.6
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 2083.5 1073 98.8
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1996.9 1073 93.6
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1979.1 1073 92.5
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1955.3 1073 92.2
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1784.2 1079 82.8
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1782.3 1085 82.5
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1766.5 1079 81.3
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1750.3 1081 81.4
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1749.6 1083 80.5
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1746.5 1081 80.3
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1744.6 1084 81.3
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1735.7 1076 80.6
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1735.3 1087 79.3
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1732.6 1080 80.2
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1728.0 1090 79.3
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1725.3 1087 79.5
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1724.1 1073 79.9
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1721.8 1090 79.0
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1721.8 1090 79.1
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1720.3 1090 78.9
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1717.6 1086 79.0
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1714.5 1090 78.5
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1713.0 1090 78.4
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1713.0 1074 79.4
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1712.6 1100 78.2
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1711.8 1085 79.4
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1710.7 1102 77.9
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1710.3 1087 78.7
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1706.8 1082 78.8
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1703.3 1090 79.0
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1703.0 1087 78.5
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1700.6 1091 78.6
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1699.9 1094 78.6
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1699.5 1086 78.1
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1696.8 1110 77.2
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1688.7 1085 77.5
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1684.5 1076 77.7
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1683.7 1094 77.9
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1681.0 1087 77.8
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1680.6 1081 78.4
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1679.1 1071 78.5
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1676.8 1086 76.8
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1675.6 1087 77.1
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1674.8 1105 76.8
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1672.5 1085 77.4
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1669.1 1046 79.4
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1668.3 1086 76.5
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1661.7 1083 76.1
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1659.4 1086 76.3
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1658.7 1125 74.7
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1656.0 1078 76.0
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1651.3 1080 76.9
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1650.6 1119 74.4
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1649.4 1082 76.2
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1648.3 1078 76.6
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 1028 79.0
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1644.4 1074 77.0
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1101 75.6
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1083 75.9
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1641.7 1007 79.4
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1640.9 1086 76.4
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1639.8 1087 75.4
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1639.0 1099 75.5
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1179 71.2
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1633.2 1169 72.1
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1196 70.7
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1620.5 1065 75.2
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1619.8 1081 75.4
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1617.8 1075 75.3
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1615.1 1072 74.8
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1614.7 1074 74.9
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1613.6 1065 75.0
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1613.2 1071 75.4
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1612.4 1084 75.3
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1608.6 1082 73.9
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1608.6 1086 74.4
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1607.0 1075 74.7
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1605.1 1074 74.6
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1074 74.9
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1603.2 1082 73.7
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1602.4 1074 74.9
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1600.5 1074 74.7
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1598.9 1074 74.7
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1598.6 1081 73.9
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1598.2 1085 73.7
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1595.1 1006 77.8
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1593.2 1070 74.5
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1590.5 1080 73.8
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1585.9 1069 73.8
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1582.4 1082 73.5
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1580.8 1114 71.8
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1580.5 1083 73.9
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1578.9 1096 72.3
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1575.8 1118 71.8
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1573.1 1082 73.4
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1568.5 1077 72.8
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1568.5 1075 74.0
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1564.3 1081 72.5
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1562.0 1146 69.3
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1562.0 1083 72.4
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1562.0 1076 72.9
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1560.0 1081 72.2
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1552.7 1072 72.7
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1508.8 1009 74.9
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1498.4 969 75.5
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1483.4 869 83.2
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1482.6 1116 68.8
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1473.8 1093 70.5
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1468.8 914 78.8
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1464.9 1014 70.4
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1438.7 1014 68.5
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1396.3 1104 67.0
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1395.6 1104 66.9
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1377.5 748 94.7
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1371.7 957 70.1
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1320.8 801 80.3
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1301.6 1005 64.3
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1213.0 1058 59.5
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1197.2 842 72.7
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1177.5 752 78.6
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1117.4 1021 55.0
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1114.8 999 57.0
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1112.4 1028 55.1
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1107.8 722 76.0
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 3.0e-308 1062.0 739 72.0
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 3.7e-282 975.3 878 60.6
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.9e-278 963.0 876 57.5
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.4e-274 948.0 777 61.3
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 3.9e-263 912.1 580 75.2
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.1e-256 889.8 596 75.8
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 7.9e-248 861.3 967 46.3
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.4e-220 770.8 671 58.7
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 5.3e-212 742.3 646 60.5
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 3.4e-206 723.0 756 52.4
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 5.7e-206 722.2 445 80.0
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 7.0e-180 635.6 411 76.4
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 4.0e-175 619.8 508 67.1
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.9e-173 613.6 532 62.4
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 6.4e-173 612.5 399 78.4
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.3e-170 604.7 408 73.5
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.0e-162 577.0 472 66.5
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 5.2e-159 566.2 1029 36.5
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 8.1e-152 542.3 347 79.8
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.2e-147 528.5 393 65.4
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.3e-130 471.9 328 70.4
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 2.2e-128 464.5 393 61.8
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 6.9e-127 459.5 309 71.8
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 3.7e-112 410.6 991 31.4
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.1e-107 394.8 943 30.1
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 4.4e-105 387.1 278 71.9
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 1.4e-103 382.1 951 28.7
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 3.0e-98 364.4 227 78.4
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 7.2e-92 343.2 908 30.0
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 4.1e-79 300.8 154 88.3
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 8.6e-61 240.0 864 24.5
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.1e-50 206.5 332 35.5
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 2.0e-49 202.2 310 42.6
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 4.4e-49 201.1 222 48.6
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 7.1e-47 193.7 124 77.4
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 6.0e-46 190.7 220 52.7
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.6e-44 184.1 170 55.9
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.4e-42 179.5 152 58.6
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 6.4e-40 170.6 273 38.5
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.1e-39 169.9 151 66.2
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 3.9e-37 161.4 125 65.6
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 8.7e-37 160.2 462 27.9
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.1e-36 159.8 154 56.5
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.8e-34 152.5 149 54.4
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 4.5e-33 147.9 163 44.2
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 3.5e-30 138.3 430 27.2
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.3e-24 119.8 111 53.2
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.1e-23 116.7 296 27.0
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 4.6e-22 111.3 81 64.2
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.1e-18 98.6 83 62.7
CAN.G241.30 Capsicum annuum HOM05D003855 ORTHO05D115394 4.2e-15 88.2 145 44.8
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.5e-12 79.0 55 63.6
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 5.7e-12 77.8 56 62.5
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 4.1e-10 71.6 48 68.8
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 1.5e-09 69.7 172 38.4
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.0e-08 67.0 48 66.7
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 2.5e-07 62.4 77 44.2
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 3.2e-07 62.0 36 77.8


User provided reference genes

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