Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 5.2e-198 694.1 337 100.0
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 1.2e-178 629.8 312 97.4
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 3.5e-178 628.2 337 89.0
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.0e-177 626.7 337 89.3
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 3.0e-177 625.2 337 90.8
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 3.0e-177 625.2 337 90.8
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 5.9e-157 557.8 335 78.8
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 4.2e-155 551.6 335 76.7
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 4.6e-154 548.1 337 76.6
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.5e-152 543.1 335 76.4
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.5e-152 543.1 335 76.4
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 2.0e-152 542.7 335 76.1
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 3.3e-152 542.0 337 74.5
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 9.7e-152 540.4 337 76.3
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 9.7e-152 540.4 335 74.9
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 3.7e-151 538.5 337 74.8
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 4.8e-151 538.1 337 74.8
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.4e-150 536.6 337 75.4
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 1.4e-150 536.6 337 75.7
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 9.1e-150 533.9 337 76.0
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 9.1e-150 533.9 337 76.3
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 1.2e-149 533.5 337 74.2
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.6e-149 532.3 337 75.4
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 5.9e-149 531.2 338 73.4
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 5.9e-149 531.2 332 73.8
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 7.7e-149 530.8 337 73.0
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 3.8e-148 528.5 337 73.3
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.8e-148 528.5 337 73.9
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 6.5e-148 527.7 337 73.9
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 5.5e-147 524.6 337 73.0
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 7.2e-147 524.2 337 74.8
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 7.2e-147 524.2 337 74.2
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.1e-146 522.7 331 75.5
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 4.7e-146 521.5 337 73.6
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 7.9e-146 520.8 339 72.3
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 7.9e-146 520.8 337 73.6
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.0e-145 520.4 337 72.4
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 2.3e-145 519.2 337 73.0
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 3.9e-145 518.5 336 72.0
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 5.1e-145 518.1 336 72.3
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 6.7e-145 517.7 337 72.1
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 8.8e-145 517.3 337 70.9
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.1e-144 516.9 336 72.3
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 4.4e-144 515.0 337 72.1
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 5.7e-144 514.6 337 70.6
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 5.7e-144 514.6 337 73.3
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 5.7e-144 514.6 337 72.1
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 9.7e-144 513.8 337 70.9
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.3e-143 513.5 333 72.7
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.7e-143 513.1 337 71.8
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.8e-143 512.3 337 71.8
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 2.8e-143 512.3 337 70.3
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.8e-143 511.5 337 71.8
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 8.2e-143 510.8 337 70.6
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.4e-142 510.0 337 70.3
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 3.1e-142 508.8 335 72.5
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 3.1e-142 508.8 335 71.9
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 9.1e-142 507.3 337 71.5
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 1.2e-141 506.9 337 70.3
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.5e-141 506.5 335 73.1
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.7e-140 503.1 337 71.2
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 6.5e-140 501.1 325 71.4
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.9e-139 499.6 339 69.9
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 2.5e-139 499.2 334 70.1
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 2.5e-139 499.2 334 69.2
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 3.2e-139 498.8 338 70.7
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 7.2e-139 497.7 338 71.0
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 7.2e-139 497.7 337 70.6
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 9.4e-139 497.3 337 69.7
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.6e-138 496.5 330 70.0
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 3.6e-138 495.4 338 70.1
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 3.6e-138 495.4 331 71.6
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 6.1e-138 494.6 335 71.6
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 1.0e-137 493.8 338 70.1
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.0e-137 491.9 337 69.1
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 8.8e-137 490.7 338 69.8
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.1e-136 490.3 337 69.4
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 1.5e-136 490.0 338 69.2
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 3.3e-136 488.8 341 69.2
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 1.7e-135 486.5 330 70.0
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 2.8e-135 485.7 330 68.5
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 8.2e-135 484.2 345 67.8
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.4e-134 483.4 338 67.8
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 1.8e-134 483.0 346 67.3
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 1.8e-134 483.0 331 68.9
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 2.2e-132 476.1 337 67.1
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.5e-131 472.6 328 68.9
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 3.2e-131 472.2 335 68.1
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 4.2e-131 471.9 335 68.4
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 2.3e-129 466.1 337 66.2
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.3e-129 466.1 337 66.8
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 3.0e-129 465.7 324 67.3
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 1.2e-128 463.8 334 65.6
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 5.7e-128 461.5 334 66.8
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 5.7e-128 461.5 328 69.8
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 2.8e-127 459.1 334 65.3
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 3.7e-127 458.8 334 65.9
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 1.1e-126 457.2 337 66.8
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 2.7e-125 452.6 324 65.7
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 7.7e-125 451.1 329 65.3
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 3.8e-124 448.7 329 65.3
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 6.8e-121 438.0 332 62.3
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 2.0e-120 436.4 325 63.7
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 2.6e-120 436.0 325 63.4
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 5.4e-118 428.3 331 62.2
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 5.4e-118 428.3 321 66.0
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.6e-117 426.8 289 69.2
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 3.8e-116 422.2 289 67.5
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 1.5e-115 420.2 331 61.3
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 1.6e-114 416.8 377 54.9
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.6e-114 416.8 325 62.2
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.6e-114 416.8 334 62.0
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 2.8e-114 416.0 326 62.0
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 2.3e-113 412.9 311 65.0
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.2e-112 410.6 325 61.8
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 1.5e-112 410.2 329 60.8
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.6e-109 400.2 263 71.1
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 4.3e-107 392.1 316 60.1
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 2.3e-105 386.3 261 71.6
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.1e-93 346.7 376 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.5e-91 340.5 337 51.9
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 2.5e-91 339.7 347 53.3
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 9.9e-88 327.8 337 52.2
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 8.4e-87 324.7 349 48.7
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 4.1e-86 322.4 223 70.4
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 3.9e-84 315.8 209 72.7
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 3.6e-82 309.3 276 54.7
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 5.2e-81 305.4 315 51.1
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 1.2e-77 294.3 279 53.4
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 8.7e-76 288.1 407 42.5
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 5.6e-75 285.4 192 68.2
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 6.0e-69 265.4 255 53.3
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 6.7e-60 235.3 185 57.3
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 1.4e-57 227.6 218 51.4
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 1.5e-56 224.2 155 68.4
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 2.1e-50 203.8 371 34.2
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.2e-45 188.0 144 61.1
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 3.5e-45 186.4 248 43.5
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 3.9e-44 183.0 150 60.7
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 6.7e-44 182.2 328 38.1
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 2.2e-42 177.2 133 64.7
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 2.2e-42 177.2 133 64.7
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 1.4e-41 174.5 138 60.9
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 1.9e-30 137.5 109 66.1
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 2.3e-28 130.6 89 71.9
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 3.9e-28 129.8 152 44.1
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 8.8e-28 128.6 91 63.7
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 1.2e-21 108.2 407 26.5
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 1.5e-19 101.3 66 74.2
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 3.1e-17 93.6 66 71.2
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 7.7e-16 89.0 76 51.3
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.4e-11 73.6 39 82.1
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 9.8e-11 72.0 58 67.2
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.7e-07 61.2 51 62.7
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 2.2e-07 60.8 66 45.5


User provided reference genes

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