Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 2.2e-246 855.1 421 100.0
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 2.3e-243 845.1 421 99.0
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.6e-241 839.0 421 97.6
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 7.4e-234 813.5 421 94.3
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.0e-230 800.8 435 90.1
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.8e-224 782.3 416 90.1
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 1.6e-204 716.1 417 81.5
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 9.8e-202 706.8 417 81.3
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 2.8e-201 705.3 417 81.3
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 6.3e-201 704.1 417 80.6
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 6.3e-201 704.1 418 79.9
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.8e-200 702.6 419 80.2
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 4.1e-200 701.4 417 79.6
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 7.0e-200 700.7 417 80.1
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 9.1e-200 700.3 416 80.3
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.6e-199 699.5 418 81.6
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 1.6e-199 699.5 416 78.4
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 2.0e-199 699.1 417 79.9
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 2.7e-199 698.7 417 80.1
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.3e-198 696.4 419 80.4
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 1.7e-198 696.0 418 80.4
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 3.8e-198 694.9 440 77.5
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 3.8e-198 694.9 413 79.9
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.0e-198 694.5 417 80.3
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 5.0e-198 694.5 457 74.0
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 8.6e-198 693.7 418 80.9
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.1e-197 693.3 418 78.5
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.5e-197 693.0 417 78.2
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 5.5e-197 691.0 418 78.5
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 5.5e-197 691.0 413 78.7
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 7.2e-197 690.6 438 76.0
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 9.5e-197 690.3 416 78.1
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 9.5e-197 690.3 417 78.2
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.1e-196 689.1 418 80.1
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.8e-196 688.7 412 79.1
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.8e-195 686.0 417 78.7
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.8e-195 686.0 418 80.1
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.8e-195 686.0 418 78.5
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 6.8e-195 684.1 417 78.4
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 8.8e-195 683.7 434 77.4
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.2e-194 683.3 417 78.4
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.2e-194 683.3 416 78.4
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.2e-194 683.3 418 78.2
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.5e-194 682.9 417 77.9
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 2.0e-194 682.6 418 77.8
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 2.0e-194 682.6 416 78.8
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 2.6e-194 682.2 418 78.5
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 3.4e-194 681.8 416 78.1
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.7e-194 681.0 416 77.6
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 5.7e-194 681.0 418 78.5
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 7.5e-194 680.6 416 78.1
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 9.8e-194 680.2 414 78.0
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 1.3e-193 679.9 415 77.3
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.3e-193 679.9 418 78.9
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.3e-193 679.9 418 79.2
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-193 679.1 418 77.3
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-193 679.1 418 77.3
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 4.9e-193 677.9 414 78.3
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 4.9e-193 677.9 435 77.0
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 8.3e-193 677.2 416 76.9
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.8e-192 676.0 418 77.0
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 2.4e-192 675.6 416 76.4
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 2.4e-192 675.6 418 77.5
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 2.4e-192 675.6 413 76.8
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 3.1e-192 675.2 416 76.4
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 3.1e-192 675.2 412 77.4
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 4.1e-192 674.9 414 77.8
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 4.1e-192 674.9 417 76.3
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 5.4e-192 674.5 416 76.9
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 7.0e-192 674.1 418 77.3
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.2e-191 673.3 416 76.7
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.2e-191 673.3 504 67.1
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.0e-191 672.5 418 76.8
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 4.5e-191 671.4 416 76.7
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.9e-191 671.0 418 77.3
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.0e-190 670.2 416 77.4
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.0e-190 670.2 411 78.1
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.7e-190 669.5 416 76.2
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.7e-190 669.5 416 76.0
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 2.3e-190 669.1 416 76.9
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 3.8e-190 668.3 419 74.9
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.8e-190 668.3 413 77.5
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 8.6e-190 667.2 418 76.1
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.5e-189 666.4 416 75.5
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.5e-189 666.4 434 74.7
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.5e-189 666.4 434 74.7
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 2.5e-189 665.6 418 76.3
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 2.5e-189 665.6 411 76.6
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.5e-189 665.6 418 76.3
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 3.3e-189 665.2 413 76.0
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 5.6e-189 664.5 416 76.4
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 9.5e-189 663.7 434 74.4
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.1e-188 662.5 416 77.2
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 2.1e-188 662.5 416 75.0
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 3.6e-188 661.8 411 76.9
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 8.0e-188 660.6 417 75.5
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 8.0e-188 660.6 413 75.3
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.4e-187 659.8 416 76.2
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.3e-187 659.1 413 75.5
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 5.2e-187 657.9 416 75.0
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.5e-186 656.4 417 75.3
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 2.6e-186 655.6 416 74.8
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 3.4e-186 655.2 415 75.2
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.9e-185 652.1 416 74.8
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.9e-185 652.1 416 75.2
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.1e-184 650.2 411 74.0
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.8e-184 649.4 418 76.6
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.4e-184 649.0 416 74.0
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 4.1e-184 648.3 416 74.8
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.6e-183 646.4 416 74.0
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 2.7e-183 645.6 412 74.3
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 5.9e-183 644.4 411 74.0
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 5.0e-182 641.3 412 73.5
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 3.3e-181 638.6 413 72.9
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.6e-180 636.3 402 76.4
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.1e-180 636.0 417 74.8
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 3.6e-180 635.2 449 69.5
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 6.2e-180 634.4 417 74.1
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 3.1e-179 632.1 415 73.3
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 2.6e-178 629.0 418 73.9
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 4.4e-178 628.2 417 73.4
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.3e-177 626.7 413 72.9
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 2.7e-175 619.0 416 71.9
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.7e-175 619.0 412 73.1
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.1e-173 613.6 365 79.7
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 7.3e-173 610.9 370 77.8
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 9.5e-173 610.5 416 70.9
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 2.8e-172 609.0 412 69.9
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 6.8e-171 604.4 418 70.6
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 2.9e-169 599.0 363 77.7
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 8.6e-166 587.4 421 65.1
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 3.1e-163 578.9 361 75.3
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 3.4e-162 575.5 416 69.0
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 3.5e-159 565.5 341 78.0
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.5e-157 560.1 341 76.5
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 2.4e-155 552.7 413 63.2
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 6.4e-153 544.7 413 60.8
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 7.8e-151 537.7 434 64.7
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 8.1e-148 527.7 411 61.3
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.8e-147 526.6 410 60.2
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 2.7e-143 512.7 415 61.0
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 1.9e-136 490.0 428 56.3
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.6e-133 478.4 342 69.3
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 9.6e-133 477.6 291 78.7
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.5e-122 443.7 314 70.4
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 3.9e-118 429.1 302 70.2
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.9e-117 426.8 291 72.5
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.2e-111 407.5 198 96.5
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.1e-110 402.1 198 94.9
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 4.4e-109 399.1 223 82.1
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 2.8e-108 396.4 502 42.0
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 4.2e-104 382.5 405 47.2
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 2.3e-102 376.7 407 46.9
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-100 370.9 235 75.3
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 8.2e-100 368.2 427 44.7
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 4.8e-92 342.4 241 66.8
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 2.1e-79 300.4 219 68.9
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 8.3e-76 288.5 216 67.6
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 5.8e-69 265.8 174 73.0
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 9.8e-69 265.0 258 55.4
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.5e-66 256.5 163 77.3
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 9.8e-61 238.4 121 89.3
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.2e-59 233.4 151 74.8
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.6e-58 231.1 178 64.6
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 1.3e-57 228.0 229 54.1
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 8.1e-55 218.8 155 65.2
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.4e-52 209.1 181 59.1
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.3e-49 200.7 124 73.4
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.9e-49 199.9 337 38.9
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 6.2e-47 192.6 128 71.1
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.5e-45 188.0 343 38.2
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.7e-41 174.5 127 65.4
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.6e-39 166.8 122 65.6
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 3.6e-39 166.8 100 78.0
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 8.4e-28 129.0 126 57.1
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 4.6e-26 123.2 78 73.1
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.9e-24 117.9 87 67.8
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.1e-22 112.1 71 73.2
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.3e-17 95.1 59 74.6
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 1.0e-12 79.0 86 43.0
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 2.2e-12 77.8 99 40.4
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.9e-12 76.6 60 68.3
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 8.2e-07 59.3 131 30.5
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.1e-06 58.9 35 71.4


User provided reference genes

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