Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 2.5e-43 178.3 88 100.0
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 2.0e-40 168.7 83 98.8
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 1.7e-39 165.6 86 93.0
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 1.7e-31 139.0 70 94.3
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 3.8e-31 137.9 80 78.8
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 4.9e-31 137.5 83 78.3
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 8.4e-31 136.7 82 76.8
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 1.1e-30 136.3 80 76.2
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 1.1e-30 136.3 71 90.1
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 1.9e-30 135.6 85 72.9
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 2.5e-30 135.2 83 75.9
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 4.2e-30 134.4 80 76.2
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 5.5e-30 134.0 83 74.7
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 7.1e-30 133.7 86 72.1
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 7.1e-30 133.7 86 68.6
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 9.3e-30 133.3 85 72.9
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 9.3e-30 133.3 83 74.7
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 9.3e-30 133.3 83 74.7
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 1.2e-29 132.9 80 76.2
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 1.2e-29 132.9 80 76.2
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 1.6e-29 132.5 80 75.0
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 1.6e-29 132.5 82 75.6
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 2.1e-29 132.1 81 76.5
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 2.1e-29 132.1 80 75.0
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 2.7e-29 131.7 80 76.2
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 3.5e-29 131.3 80 75.0
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 3.5e-29 131.3 81 74.1
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 3.5e-29 131.3 80 76.2
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 6.0e-29 130.6 86 67.4
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 6.0e-29 130.6 84 71.4
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 1.0e-28 129.8 80 73.8
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 1.3e-28 129.4 80 75.0
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 1.8e-28 129.0 80 73.8
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 1.8e-28 129.0 80 72.5
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 1.8e-28 129.0 82 72.0
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 1.8e-28 129.0 80 75.0
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 2.3e-28 128.6 85 68.2
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 2.3e-28 128.6 80 72.5
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 2.3e-28 128.6 80 75.0
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 3.0e-28 128.3 80 73.8
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 3.0e-28 128.3 80 75.0
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 3.0e-28 128.3 81 72.8
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 5.1e-28 127.5 80 70.0
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 6.7e-28 127.1 80 72.5
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 8.7e-28 126.7 83 71.1
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 1.1e-27 126.3 80 71.2
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 1.1e-27 126.3 80 73.8
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 1.5e-27 125.9 80 71.2
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 1.9e-27 125.6 80 71.2
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 1.9e-27 125.6 80 71.2
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 1.9e-27 125.6 81 72.8
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 2.5e-27 125.2 81 70.4
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 2.5e-27 125.2 80 71.2
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 2.5e-27 125.2 80 73.8
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 2.5e-27 125.2 83 71.1
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 2.5e-27 125.2 80 71.2
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 2.5e-27 125.2 80 72.5
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 2.5e-27 125.2 80 72.5
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 2.5e-27 125.2 80 70.0
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 3.3e-27 124.8 82 69.5
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 3.3e-27 124.8 80 71.2
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 3.3e-27 124.8 83 67.5
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 5.6e-27 124.0 80 70.0
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 7.4e-27 123.6 81 71.6
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 9.6e-27 123.2 82 69.5
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 1.3e-26 122.9 80 66.2
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 1.6e-26 122.5 80 73.8
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 2.1e-26 122.1 80 70.0
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 2.1e-26 122.1 80 67.5
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 2.1e-26 122.1 80 66.2
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 3.7e-26 121.3 81 72.8
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 3.7e-26 121.3 80 68.8
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 8.2e-26 120.2 81 69.1
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 1.8e-25 119.0 81 69.1
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 2.4e-25 118.6 80 67.5
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 2.4e-25 118.6 80 67.5
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 2.4e-25 118.6 80 71.2
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 1.5e-24 115.9 83 66.3
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 2.0e-24 115.5 83 66.3
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 2.0e-24 115.5 84 64.3
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 2.0e-24 115.5 80 62.5
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 3.4e-24 114.8 84 65.5
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 3.4e-24 114.8 84 65.5
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 3.4e-24 114.8 83 65.1
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 3.4e-24 114.8 83 65.1
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 7.6e-24 113.6 85 63.5
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 1.3e-23 112.8 83 66.3
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 1.3e-23 112.8 83 65.1
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 1.3e-23 112.8 83 65.1
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 1.3e-23 112.8 83 65.1
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 1.3e-23 112.8 83 65.1
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 1.3e-23 112.8 83 65.1
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 1.3e-23 112.8 83 65.1
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 2.2e-23 112.1 83 65.1
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 2.2e-23 112.1 83 63.9
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 2.2e-23 112.1 83 63.9
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 3.8e-23 111.3 80 67.5
Cfa004601 Carpinus fangiana HOM05D007211 ORTHO05D009060 4.2e-22 107.8 80 62.5
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 1.2e-21 106.3 81 63.0
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 1.0e-20 103.2 69 69.6
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 3.0e-20 101.7 75 66.7
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 5.3e-17 90.9 74 60.8
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 4.5e-16 87.8 80 55.0
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 5.9e-16 87.4 94 47.9
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 1.3e-15 86.3 61 63.9
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 1.3e-15 86.3 57 70.2
AagrBONN_evm.TU.Sc2ySwM_362.1547 Anthoceros agrestis HOM05D007211 ORTHO05D009060 2.2e-15 85.5 80 53.8
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 4.2e-14 81.3 87 49.4
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 7.2e-14 80.5 108 41.7
Pp3c17_14820 Physcomitrium patens HOM05D007211 ORTHO05D009060 3.6e-13 78.2 77 51.9
CBR_g972 Chara braunii HOM05D007211 ORTHO05D009060 5.1e-12 74.3 75 45.3
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 1.1e-09 66.6 54 61.1
AagrBONN_evm.TU.Sc2ySwM_344.3864 Anthoceros agrestis HOM05D007211 ORTHO05D009060 2.0e-08 62.4 58 51.7
Duzib248G0756 Durio zibethinus HOM05D007211 ORTHO05D009060 5.9e-08 60.8 40 70.0
MCO09G621 Micromonas commoda HOM05D007211 ORTHO05D009060 1.3e-07 59.7 65 44.6


User provided reference genes

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