Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 2.4e-72 275.4 139 100.0
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.3e-30 136.0 91 79.1
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 6.6e-30 134.4 92 78.3
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 1.9e-29 132.9 93 76.3
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 8.1e-28 127.5 102 70.6
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 4.4e-26 121.7 99 65.7
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 4.4e-26 121.7 99 65.7
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 4.4e-26 121.7 99 65.7
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.2e-25 119.4 104 61.5
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 3.7e-25 118.6 94 64.9
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 4.9e-25 118.2 67 86.6
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 4.9e-25 118.2 105 60.0
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 6.4e-25 117.9 133 51.1
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.1e-24 117.1 73 75.3
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.9e-24 116.3 90 65.6
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.9e-24 116.3 90 67.8
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 2.4e-24 115.9 86 69.8
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 3.2e-24 115.5 85 70.6
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 5.4e-24 114.8 88 67.0
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 5.4e-24 114.8 108 59.3
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 7.1e-24 114.4 89 66.3
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.2e-23 113.6 89 65.2
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.6e-23 113.2 88 65.9
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 2.7e-23 112.5 90 65.6
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.6e-23 111.7 86 67.4
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.6e-23 111.7 86 67.4
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 4.6e-23 111.7 88 65.9
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 4.6e-23 111.7 88 65.9
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 7.8e-23 110.9 88 65.9
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.0e-22 110.5 72 73.6
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.0e-22 110.5 86 65.1
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.3e-22 110.2 84 69.0
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.3e-22 110.2 89 65.2
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.7e-22 109.8 90 62.2
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.7e-22 109.8 85 65.9
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 1.7e-22 109.8 89 65.2
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.7e-22 109.8 104 61.5
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.3e-22 109.4 89 64.0
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.3e-22 109.4 89 64.0
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.0e-22 109.0 86 66.3
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 3.0e-22 109.0 86 65.1
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 3.9e-22 108.6 89 65.2
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 3.9e-22 108.6 85 67.1
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 3.9e-22 108.6 89 64.0
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 3.9e-22 108.6 88 63.6
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 5.1e-22 108.2 91 63.7
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 5.1e-22 108.2 84 69.0
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 6.6e-22 107.8 89 60.7
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 8.6e-22 107.5 87 65.5
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 8.6e-22 107.5 94 63.8
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.1e-21 107.1 86 66.3
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.1e-21 107.1 87 62.1
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.1e-21 107.1 89 61.8
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 1.5e-21 106.7 87 62.1
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.5e-21 106.7 87 62.1
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 1.5e-21 106.7 105 58.1
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 1.5e-21 106.7 88 63.6
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.9e-21 106.3 87 64.4
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 2.5e-21 105.9 84 65.5
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 2.5e-21 105.9 88 64.8
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 2.5e-21 105.9 88 64.8
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 2.5e-21 105.9 90 62.2
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 2.5e-21 105.9 85 64.7
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 3.3e-21 105.5 87 63.2
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.3e-21 105.1 106 57.5
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 4.3e-21 105.1 85 65.9
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 4.3e-21 105.1 89 60.7
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.6e-21 104.8 105 58.1
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 5.6e-21 104.8 89 60.7
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 7.3e-21 104.4 84 64.3
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 7.3e-21 104.4 84 66.7
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 7.3e-21 104.4 80 70.0
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 7.3e-21 104.4 85 62.4
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 9.6e-21 104.0 85 64.7
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.2e-20 103.6 87 62.1
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 2.1e-20 102.8 88 61.4
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 2.1e-20 102.8 93 60.2
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 2.8e-20 102.4 90 61.1
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.8e-20 102.4 87 60.9
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 2.8e-20 102.4 77 68.8
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 3.6e-20 102.1 88 62.5
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 3.6e-20 102.1 86 61.6
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 3.6e-20 102.1 88 63.6
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 4.7e-20 101.7 90 60.0
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 4.7e-20 101.7 82 64.6
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 4.7e-20 101.7 105 53.3
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 8.1e-20 100.9 88 61.4
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 8.1e-20 100.9 88 61.4
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 8.1e-20 100.9 85 63.5
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 1.1e-19 100.5 76 69.7
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.1e-19 100.5 84 61.9
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 1.4e-19 100.1 88 61.4
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 1.4e-19 100.1 90 60.0
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 1.4e-19 100.1 85 63.5
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 1.4e-19 100.1 82 63.4
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.8e-19 99.8 104 52.9
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 2.4e-19 99.4 88 60.2
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 2.4e-19 99.4 80 67.5
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 2.4e-19 99.4 88 60.2
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 3.1e-19 99.0 84 64.3
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 3.1e-19 99.0 90 57.8
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 3.1e-19 99.0 80 65.0
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 4.0e-19 98.6 90 57.8
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 6.8e-19 97.8 88 59.1
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 6.8e-19 97.8 88 59.1
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.5e-18 96.7 88 59.1
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 2.0e-18 96.3 79 67.1
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 2.0e-18 96.3 76 65.8
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 2.6e-18 95.9 85 60.0
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 4.4e-18 95.1 88 58.0
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 7.6e-18 94.4 87 62.1
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 9.9e-18 94.0 84 59.5
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 2.9e-17 92.4 82 61.0
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 1.4e-16 90.1 104 48.1
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 5.4e-16 88.2 106 45.3
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 9.3e-16 87.4 56 73.2
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 2.7e-15 85.9 91 50.5
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 6.0e-15 84.7 71 63.4
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 2.3e-14 82.8 80 55.0
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 2.5e-13 79.3 43 86.0
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 2.8e-12 75.9 70 51.4
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 4.0e-11 72.0 76 55.3
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 7.6e-10 67.8 55 65.5
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.1e-08 63.9 87 40.2
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.9e-08 63.2 71 46.5
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 2.4e-08 62.8 53 62.3
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 6.0e-07 58.2 70 45.7
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 1.0e-06 57.4 70 44.3


User provided reference genes

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