Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 5.9e-42 173.7 83 100.0
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.1e-37 159.5 82 91.5
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.4e-35 151.8 82 86.6
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 5.3e-35 150.6 82 86.6
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 2.6e-34 148.3 82 85.4
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 2.6e-34 148.3 82 84.1
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 6.1e-31 137.1 82 76.8
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.0e-30 134.8 82 79.3
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 3.0e-30 134.8 82 73.2
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 3.9e-30 134.4 82 74.4
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.9e-30 134.4 82 74.4
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 8.8e-30 133.3 82 73.2
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 2.6e-29 131.7 82 75.6
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 7.4e-29 130.2 82 72.0
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.2e-28 128.6 82 75.6
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 3.7e-28 127.9 82 73.2
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 3.7e-28 127.9 82 72.0
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 3.7e-28 127.9 82 72.0
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 6.3e-28 127.1 82 73.2
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 8.2e-28 126.7 82 73.2
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 1.4e-27 125.9 82 72.0
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.8e-27 125.6 82 69.5
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 2.4e-27 125.2 82 69.5
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 4.1e-27 124.4 82 73.2
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 5.3e-27 124.0 82 74.4
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 5.3e-27 124.0 82 73.2
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 7.0e-27 123.6 82 72.0
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 9.1e-27 123.2 82 69.5
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.2e-26 122.9 82 69.5
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 1.2e-26 122.9 82 69.5
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.6e-26 122.5 82 73.2
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.6e-26 121.7 81 72.8
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.6e-26 121.7 81 72.8
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.6e-26 121.7 81 72.8
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 3.5e-26 121.3 82 67.1
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 3.5e-26 121.3 82 70.7
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 5.9e-26 120.6 82 70.7
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 1.0e-25 119.8 82 70.7
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 1.0e-25 119.8 82 69.5
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.0e-25 119.8 82 69.5
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.7e-25 119.0 82 68.3
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.7e-25 119.0 82 68.3
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 2.2e-25 118.6 82 68.3
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.2e-25 118.6 81 67.9
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 2.2e-25 118.6 82 69.5
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 2.9e-25 118.2 82 68.3
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 3.8e-25 117.9 82 67.1
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 5.0e-25 117.5 82 68.3
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 6.5e-25 117.1 82 65.9
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 6.5e-25 117.1 82 67.1
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 8.5e-25 116.7 82 68.3
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 8.5e-25 116.7 83 65.1
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 8.5e-25 116.7 82 68.3
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 1.1e-24 116.3 82 67.1
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.1e-24 116.3 82 68.3
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 1.1e-24 116.3 82 65.9
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 1.5e-24 115.9 82 67.1
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 1.5e-24 115.9 82 67.1
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.5e-24 115.9 81 66.7
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 1.5e-24 115.9 81 66.7
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.5e-24 115.9 82 65.9
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 1.5e-24 115.9 83 66.3
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.9e-24 115.5 82 64.6
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 1.9e-24 115.5 82 67.1
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.5e-24 115.2 82 64.6
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 3.2e-24 114.8 82 67.1
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 4.2e-24 114.4 82 64.6
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 4.2e-24 114.4 82 64.6
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 5.5e-24 114.0 82 64.6
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 5.5e-24 114.0 83 66.3
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 5.5e-24 114.0 82 64.6
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 7.2e-24 113.6 82 65.9
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 7.2e-24 113.6 83 65.1
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 7.2e-24 113.6 82 69.5
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 9.4e-24 113.2 82 65.9
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 1.2e-23 112.8 82 64.6
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 1.2e-23 112.8 83 65.1
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.6e-23 112.5 83 65.1
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 2.1e-23 112.1 82 64.6
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 2.1e-23 112.1 82 63.4
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.1e-23 112.1 82 63.4
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 2.1e-23 112.1 112 53.6
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 2.1e-23 112.1 83 65.1
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 4.7e-23 110.9 82 63.4
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 6.1e-23 110.5 82 63.4
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 6.1e-23 110.5 83 62.7
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 8.0e-23 110.2 83 61.4
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 8.0e-23 110.2 83 61.4
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 8.0e-23 110.2 83 62.7
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 8.0e-23 110.2 83 60.2
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.0e-22 109.8 82 64.6
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.0e-22 109.8 82 62.2
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.0e-22 109.8 82 62.2
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.0e-22 109.8 82 62.2
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 1.0e-22 109.8 83 61.4
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.0e-22 109.8 82 65.9
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 1.8e-22 109.0 83 61.4
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 1.8e-22 109.0 83 68.7
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.3e-22 108.6 82 63.4
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 3.0e-22 108.2 82 64.6
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 6.7e-22 107.1 94 58.5
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 6.7e-22 107.1 86 61.6
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 8.8e-22 106.7 82 62.2
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.1e-21 106.3 79 68.4
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.5e-21 105.9 82 65.9
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.5e-21 105.9 82 62.2
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.5e-21 105.9 82 59.8
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 3.3e-21 104.8 97 56.7
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 5.7e-21 104.0 76 61.8
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 8.2e-20 100.1 76 60.5
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.1e-19 98.2 48 95.8
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.7e-18 95.1 60 75.0
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 2.7e-18 95.1 81 54.3
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 6.5e-17 90.5 79 57.0
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 6.1e-15 84.0 83 53.0
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 8.0e-15 83.6 56 69.6
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 1.0e-14 83.2 83 54.2
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 3.0e-14 81.6 77 54.5
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 3.0e-14 81.6 77 54.5
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 4.0e-14 81.3 81 50.6
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 3.4e-13 78.2 76 50.0
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 5.7e-13 77.4 81 46.9
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 7.5e-13 77.0 73 52.1
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 9.8e-13 76.6 76 50.0
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 4.8e-12 74.3 62 56.5
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 6.3e-12 73.9 60 55.0
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.1e-11 73.2 82 46.3
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 7.0e-11 70.5 42 78.6
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 1.6e-10 69.3 85 44.7
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 7.7e-10 67.0 47 66.0
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.0e-09 66.6 66 48.5
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 2.2e-09 65.5 35 77.1
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 5.0e-09 64.3 36 75.0
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 1.1e-08 63.2 47 61.7
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.5e-08 62.0 90 43.3
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 4.2e-08 61.2 62 48.4
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 1.2e-07 59.7 37 67.6
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.6e-07 59.3 35 74.3
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 3.6e-07 58.2 39 64.1
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 4.7e-07 57.8 35 71.4
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 6.1e-07 57.4 35 65.7
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 8.0e-07 57.0 35 68.6
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 5.2e-06 54.3 43 60.5


User provided reference genes

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