Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.2e-45 186.0 85 100.0
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 9.9e-45 183.0 85 97.6
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 1.3e-33 146.0 79 84.8
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.7e-26 121.7 81 66.7
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 5.6e-24 114.0 91 61.5
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.0e-21 105.5 83 56.6
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 1.0e-20 103.2 75 65.3
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.9e-20 101.7 71 66.2
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 1.6e-18 95.9 70 62.9
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 6.0e-18 94.0 82 50.0
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 7.9e-18 93.6 69 58.0
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 5.1e-17 90.9 51 74.5
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.1e-16 89.7 51 72.5
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.1e-16 89.7 51 72.5
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 1.9e-16 89.0 57 70.2
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.5e-16 88.6 73 56.2
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 3.3e-16 88.2 56 66.1
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 4.3e-16 87.8 65 61.5
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 5.7e-16 87.4 58 63.8
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 5.7e-16 87.4 80 52.5
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 7.4e-16 87.0 69 50.7
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 7.4e-16 87.0 79 53.2
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 9.7e-16 86.7 52 65.4
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 9.7e-16 86.7 71 56.3
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 1.3e-15 86.3 51 68.6
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.3e-15 86.3 57 66.7
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 1.6e-15 85.9 74 52.7
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 2.2e-15 85.5 75 52.0
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 2.2e-15 85.5 44 77.3
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 2.2e-15 85.5 50 70.0
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 3.7e-15 84.7 68 55.9
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 4.8e-15 84.3 67 58.2
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 4.8e-15 84.3 68 54.4
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 6.3e-15 84.0 47 72.3
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 6.3e-15 84.0 48 68.8
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 6.3e-15 84.0 48 68.8
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 8.2e-15 83.6 50 68.0
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 1.1e-14 83.2 65 55.4
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 1.1e-14 83.2 57 68.4
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 1.4e-14 82.8 50 66.0
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 1.4e-14 82.8 50 66.0
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 1.4e-14 82.8 50 66.0
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 1.4e-14 82.8 50 66.0
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 1.4e-14 82.8 50 66.0
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 1.4e-14 82.8 90 55.6
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.4e-14 82.8 90 55.6
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 1.8e-14 82.4 68 52.9
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 2.4e-14 82.0 63 57.1
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 2.4e-14 82.0 70 52.9
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.4e-14 82.0 47 68.1
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 3.1e-14 81.6 49 69.4
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 3.1e-14 81.6 49 69.4
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 3.1e-14 81.6 80 48.8
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 3.1e-14 81.6 79 48.1
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 4.1e-14 81.3 90 54.4
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 5.3e-14 80.9 88 51.1
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 6.9e-14 80.5 73 53.4
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 6.9e-14 80.5 56 67.9
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 9.0e-14 80.1 87 51.7
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 9.0e-14 80.1 68 52.9
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.5e-13 79.3 44 72.7
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.5e-13 79.3 90 53.3
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 1.5e-13 79.3 86 51.2
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 1.5e-13 79.3 74 48.6
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 2.0e-13 79.0 50 66.0
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 2.0e-13 79.0 50 66.0
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.0e-13 79.0 72 55.6
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 2.0e-13 79.0 73 50.7
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 2.6e-13 78.6 67 55.2
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 2.6e-13 78.6 55 58.2
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 3.4e-13 78.2 68 52.9
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 3.4e-13 78.2 68 52.9
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 3.4e-13 78.2 62 54.8
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 3.4e-13 78.2 74 47.3
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 3.4e-13 78.2 74 47.3
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 4.5e-13 77.8 47 66.0
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.5e-13 77.8 50 64.0
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 4.5e-13 77.8 51 56.9
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 5.9e-13 77.4 49 65.3
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 5.9e-13 77.4 56 57.1
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 7.7e-13 77.0 50 64.0
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 1.3e-12 76.3 49 65.3
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.7e-12 75.9 79 46.8
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 1.7e-12 75.9 45 68.9
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 1.7e-12 75.9 68 51.5
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 2.2e-12 75.5 46 65.2
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 2.2e-12 75.5 67 52.2
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 2.9e-12 75.1 75 46.7
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 3.8e-12 74.7 74 50.0
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 3.8e-12 74.7 86 41.9
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 5.0e-12 74.3 48 62.5
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 6.5e-12 73.9 73 47.9
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 8.5e-12 73.6 63 47.6
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 8.5e-12 73.6 74 48.6
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 2.5e-11 72.0 41 68.3
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 3.2e-11 71.6 61 55.7
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 4.2e-11 71.2 59 55.9
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 4.2e-11 71.2 53 60.4
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 4.2e-11 71.2 69 46.4
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 5.5e-11 70.9 74 47.3
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 7.2e-11 70.5 67 46.3
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 7.2e-11 70.5 73 46.6
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 7.2e-11 70.5 66 51.5
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 9.4e-11 70.1 57 47.4
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 9.4e-11 70.1 69 42.0
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 2.1e-10 68.9 69 50.7
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 2.1e-10 68.9 55 54.5
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 2.7e-10 68.6 53 50.9
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 2.7e-10 68.6 58 51.7
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 3.6e-10 68.2 48 58.3
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 4.6e-10 67.8 63 47.6
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 4.6e-10 67.8 61 44.3
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 3.0e-09 65.1 52 55.8
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 6.7e-09 63.9 63 47.6
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 1.1e-08 63.2 54 51.9
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 1.5e-08 62.8 76 42.1
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.9e-08 62.4 39 59.0
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.9e-08 62.4 70 44.3
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 2.5e-08 62.0 69 44.9
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 4.3e-08 61.2 37 62.2
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 5.7e-08 60.8 49 49.0
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 7.4e-08 60.5 38 60.5
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 9.7e-08 60.1 61 42.6
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 1.3e-07 59.7 42 54.8
Aqoxy7G03060 Aquilegia oxysepala HOM05D008232 ORTHO05D010390 1.7e-07 59.3 48 52.1
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 2.2e-07 58.9 51 52.9
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 3.7e-07 58.2 37 59.5
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.1e-06 56.6 41 56.1
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 5.3e-06 54.3 55 47.3
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 5.3e-06 54.3 52 48.1


User provided reference genes

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