Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 0.0e+00 1407.5 859 100.0
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 0.0e+00 1361.7 868 96.9
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 0.0e+00 1160.6 840 88.5
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 3.3e-297 1025.0 956 69.8
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 4.2e-276 954.9 888 73.4
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 7.4e-265 917.5 869 69.0
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 5.1e-197 692.2 838 63.6
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 2.8e-171 606.7 916 52.2
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 1.2e-161 574.7 929 50.6
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 5.7e-156 555.8 883 49.2
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.1e-154 551.6 883 49.9
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 7.7e-153 545.4 905 48.2
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 9.1e-146 521.9 901 45.0
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 3.5e-145 520.0 987 46.0
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 2.2e-144 517.3 946 44.8
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 2.2e-144 517.3 993 43.5
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 6.5e-144 515.8 891 45.5
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 5.5e-143 512.7 897 44.5
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 9.4e-143 511.9 871 46.6
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 1.2e-142 511.5 920 51.5
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 2.1e-142 510.8 944 44.7
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 7.4e-140 502.3 945 40.1
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 8.2e-139 498.8 928 43.8
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 4.1e-138 496.5 888 48.1
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 2.6e-137 493.8 930 44.4
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 3.5e-137 493.4 896 43.8
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 3.5e-137 493.4 920 43.7
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 1.3e-136 491.5 1032 43.1
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 1.8e-133 481.1 930 41.3
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.4e-130 471.5 989 39.9
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 1.6e-129 468.0 886 48.0
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 4.5e-129 466.5 906 44.6
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 1.9e-127 461.1 859 40.7
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 3.2e-127 460.3 912 46.4
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.2e-126 458.4 886 47.3
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 3.6e-126 456.8 860 43.1
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.0e-125 455.3 898 44.1
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.4e-125 454.9 887 47.5
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 1.1e-122 445.3 953 43.0
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 1.1e-122 445.3 871 42.3
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 1.5e-119 434.9 919 40.9
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 2.5e-119 434.1 882 42.0
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 2.8e-118 430.6 584 49.0
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 8.0e-118 429.1 859 43.1
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 3.4e-116 423.7 917 39.3
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 8.3e-115 419.1 888 43.1
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 1.4e-114 418.3 858 39.7
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 5.4e-114 416.4 901 44.3
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 7.0e-114 416.0 859 42.7
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 2.7e-113 414.1 901 44.0
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 4.6e-113 413.3 830 40.8
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 3.9e-112 410.2 607 47.6
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 5.6e-111 406.4 817 39.7
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 2.8e-110 404.1 838 40.7
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 2.8e-110 404.1 811 40.4
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 2.8e-110 404.1 872 40.0
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 8.0e-110 402.5 865 39.3
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.0e-109 402.1 861 40.3
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 1.4e-109 401.7 415 55.7
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 1.7e-107 394.8 469 53.1
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 9.2e-106 389.0 876 41.7
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 2.7e-105 387.5 432 53.5
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 1.0e-104 385.6 448 53.8
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 3.3e-103 380.6 548 46.0
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 3.3e-103 380.6 946 36.3
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 2.8e-102 377.5 428 51.2
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 2.8e-102 377.5 434 52.3
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 2.8e-102 377.5 946 37.7
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 3.6e-102 377.1 391 56.5
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 1.4e-101 375.2 503 49.3
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 5.2e-101 373.2 355 58.3
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 6.8e-101 372.9 606 44.1
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 6.8e-101 372.9 877 39.5
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 3.4e-100 370.5 935 41.5
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 3.4e-100 370.5 445 50.1
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 1.9e-98 364.8 434 50.7
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 5.4e-98 363.2 429 53.8
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 7.1e-98 362.8 506 46.4
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 4.6e-97 360.1 900 38.3
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 6.0e-97 359.8 426 50.2
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 1.7e-96 358.2 888 40.3
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 1.2e-94 352.1 433 49.9
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 2.8e-94 350.9 433 49.9
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 8.1e-94 349.4 744 37.8
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.8e-93 348.2 861 36.7
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 6.8e-93 346.3 860 37.2
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 5.8e-92 343.2 365 54.8
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 5.8e-92 343.2 866 33.5
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 3.2e-90 337.4 434 48.6
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 4.9e-83 313.5 397 50.9
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 1.3e-80 305.4 866 36.6
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 2.5e-79 301.2 495 44.4
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 2.1e-78 298.1 758 40.9
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 3.1e-77 294.3 429 44.1
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 9.3e-74 282.7 512 42.4
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 9.3e-50 203.0 304 46.4
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.8e-45 188.7 611 31.3
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.8e-45 188.7 611 31.3
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 4.3e-39 167.5 149 59.7
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 4.8e-38 164.1 707 30.4
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 3.4e-36 157.9 375 38.7
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.4e-34 152.5 883 24.5
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.6e-33 149.1 599 40.2
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 3.7e-30 137.9 343 34.4
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 4.2e-26 124.4 133 50.4
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 5.2e-24 117.5 183 42.6
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 1.6e-20 105.9 148 47.3
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 1.5e-18 99.4 281 32.4
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 4.4e-15 87.8 147 49.7
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 5.7e-15 87.4 63 63.5
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.3e-14 86.3 295 40.3
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 2.2e-14 85.5 112 51.8
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.8e-13 82.4 399 33.1
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 1.8e-13 82.4 60 63.3
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 1.7e-11 75.9 64 59.4
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 2.9e-11 75.1 111 47.7
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 1.6e-09 69.3 39 79.5
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 2.3e-08 65.5 51 70.6
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 2.6e-07 62.0 43 65.1


User provided reference genes

Program Settings