Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.5e-203 712.6 347 100.0
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 1.8e-201 705.7 347 99.1
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 3.5e-197 691.4 347 96.8
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 3.8e-183 644.8 348 89.9
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 4.3e-163 578.2 347 82.4
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 4.6e-157 558.1 348 75.9
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 3.1e-153 545.4 346 76.6
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 7.6e-152 540.8 346 76.3
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.4e-150 536.6 350 73.7
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 2.5e-150 535.8 359 73.3
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.6e-149 533.1 342 74.6
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 2.7e-149 532.3 346 74.9
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.1e-147 526.9 346 74.0
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 7.4e-147 524.2 353 72.5
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 7.4e-147 524.2 353 72.5
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.4e-145 519.2 373 68.9
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.2e-144 516.9 349 70.2
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.3e-143 513.5 363 73.3
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 6.5e-143 511.1 349 72.2
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 6.5e-143 511.1 358 70.4
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 8.5e-143 510.8 346 70.2
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 8.5e-143 510.8 350 72.0
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.2e-141 506.9 375 68.0
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.1e-141 506.1 311 82.0
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.0e-140 503.8 356 68.5
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 3.0e-140 502.3 351 71.8
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 3.9e-140 501.9 350 70.9
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 3.9e-140 501.9 350 70.3
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 5.1e-140 501.5 347 69.7
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 5.1e-140 501.5 365 69.9
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 6.7e-140 501.1 356 68.5
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 6.7e-140 501.1 346 70.8
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.1e-139 500.4 349 71.1
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 3.3e-139 498.8 358 67.3
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.3e-139 498.8 366 66.9
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 3.3e-139 498.8 359 68.5
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 4.3e-139 498.4 357 68.9
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 5.7e-139 498.0 349 69.9
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.2e-138 496.1 347 69.2
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.8e-138 495.7 349 69.9
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 2.8e-138 495.7 354 69.5
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 3.7e-138 495.4 346 68.8
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 6.3e-138 494.6 350 69.4
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 6.3e-138 494.6 347 70.6
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 8.2e-138 494.2 373 66.2
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 8.2e-138 494.2 348 70.4
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.1e-137 493.8 351 69.8
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.1e-137 493.8 351 69.8
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 5.3e-137 491.5 364 67.0
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 5.3e-137 491.5 347 70.9
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 2.6e-136 489.2 345 69.6
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 3.4e-136 488.8 326 71.8
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 4.5e-136 488.4 346 70.2
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 1.3e-135 486.9 520 51.9
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.2e-135 486.1 346 69.9
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 2.2e-135 486.1 348 68.7
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 3.8e-135 485.3 357 67.2
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 6.5e-135 484.6 374 65.0
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.1e-134 483.8 375 66.7
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.5e-134 482.6 365 66.3
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.5e-134 482.6 365 66.3
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.2e-133 480.3 361 65.7
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 2.7e-133 479.2 362 65.5
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.6e-133 478.8 357 66.4
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 3.6e-133 478.8 344 71.2
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.7e-133 478.4 357 66.4
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 4.7e-133 478.4 355 67.6
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 6.1e-133 478.0 356 66.9
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 7.9e-133 477.6 360 64.2
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.8e-132 476.5 344 68.9
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 6.7e-132 474.6 352 67.6
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.1e-131 473.8 357 66.1
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.5e-131 473.4 362 65.5
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.5e-131 473.4 355 64.5
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.3e-130 470.3 355 64.2
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.7e-130 469.9 371 65.2
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 3.7e-130 468.8 346 65.0
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.8e-130 468.4 358 64.8
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 2.4e-129 466.1 362 64.6
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 3.1e-129 465.7 364 64.0
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 1.2e-128 463.8 346 67.1
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.2e-128 463.8 330 67.9
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.3e-127 460.3 412 59.0
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 2.2e-127 459.5 349 66.8
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.1e-126 457.2 348 65.5
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 1.1e-126 457.2 346 66.2
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.6e-125 453.4 341 65.7
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 8.0e-125 451.1 352 65.6
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.0e-124 450.7 372 63.2
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.9e-124 448.7 350 64.0
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 6.7e-124 448.0 341 65.1
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 7.4e-123 444.5 378 59.0
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 9.7e-123 444.1 353 63.7
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.7e-122 443.4 353 62.9
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 2.2e-122 443.0 353 63.7
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 2.8e-122 442.6 346 63.9
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 4.8e-122 441.8 347 64.8
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.1e-121 440.7 353 63.7
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 4.1e-121 438.7 346 63.9
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 7.0e-121 438.0 361 62.6
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.6e-120 436.8 347 65.4
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 2.6e-120 436.0 346 63.0
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 2.6e-120 436.0 346 63.0
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 2.6e-120 436.0 356 62.1
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 4.5e-120 435.3 353 63.2
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 4.5e-120 435.3 374 61.8
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 5.9e-120 434.9 353 62.9
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.3e-119 433.7 353 63.2
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.8e-119 432.2 357 62.7
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 8.5e-119 431.0 353 62.6
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.1e-118 430.6 366 57.9
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.2e-118 429.1 315 66.7
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 4.2e-118 428.7 353 62.3
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 4.2e-118 428.7 344 62.5
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 9.4e-118 427.6 344 63.7
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 2.3e-116 422.9 345 62.9
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 4.0e-116 422.2 345 62.6
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 2.6e-115 419.5 347 61.7
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.6e-115 419.5 374 60.4
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.5e-112 409.1 432 52.8
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 4.5e-112 408.7 342 62.0
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 7.7e-112 407.9 346 59.0
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.0e-111 407.5 338 61.8
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.7e-111 406.8 354 60.2
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.2e-110 402.5 414 53.4
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.2e-109 400.6 345 57.7
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.0e-108 397.5 346 60.1
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 5.2e-108 395.2 329 64.4
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 6.8e-108 394.8 362 57.2
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 1.8e-105 386.7 330 61.5
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.6e-104 383.6 324 59.3
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.5e-102 376.3 362 54.7
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 1.4e-92 344.0 351 51.9
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 5.6e-86 322.0 340 50.3
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.9e-82 309.7 242 62.8
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 6.0e-80 302.0 377 46.9
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 5.1e-79 298.9 300 56.0
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 5.1e-79 298.9 372 45.2
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 3.2e-73 279.6 379 43.0
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.7e-71 273.9 363 44.6
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 4.7e-69 265.8 181 75.7
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 8.1e-69 265.0 347 43.5
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 6.8e-68 261.9 170 71.8
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 4.9e-66 255.8 240 52.9
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 6.4e-66 255.4 232 63.4
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 7.8e-64 248.4 216 63.0
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.9e-62 243.8 215 60.9
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 4.3e-62 242.7 237 54.4
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 4.3e-62 242.7 237 54.4
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 7.6e-59 231.9 390 36.9
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 9.3e-57 224.9 193 61.1
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 2.9e-50 203.4 134 76.9
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 1.4e-41 174.5 130 60.8
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.9e-34 150.2 102 68.6
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.4e-33 147.9 370 31.9
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.3e-29 134.8 350 31.1
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.7e-29 133.3 115 56.5
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 1.6e-24 117.9 72 69.4
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 9.4e-17 92.0 81 60.5
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 6.7e-15 85.9 115 44.3
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 8.8e-07 58.9 33 66.7


User provided reference genes

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