Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 3.2e-53 211.5 104 100.0
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 5.6e-50 200.7 104 93.3
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 2.0e-39 165.6 92 87.0
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 4.9e-38 161.0 112 77.7
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 2.4e-37 158.7 117 73.5
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 3.9e-35 151.4 111 74.8
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 1.0e-30 136.7 79 84.8
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 4.9e-30 134.4 105 70.5
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 5.5e-29 131.0 111 66.7
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 2.7e-28 128.6 112 61.6
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 2.1e-20 102.4 106 56.6
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 2.5e-18 95.5 116 47.4
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 9.7e-18 93.6 65 72.3
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 1.3e-17 93.2 109 54.1
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 6.3e-17 90.9 65 70.8
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 1.8e-16 89.4 93 51.6
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 4.1e-16 88.2 65 67.7
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 1.2e-15 86.7 103 48.5
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 1.5e-15 86.3 80 58.8
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 2.6e-15 85.5 66 68.2
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 2.6e-15 85.5 107 49.5
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 4.5e-15 84.7 67 59.7
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 7.7e-15 84.0 114 46.5
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 7.7e-15 84.0 68 60.3
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 1.0e-14 83.6 113 45.1
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 1.0e-14 83.6 71 60.6
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.2e-14 82.4 68 63.2
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 2.9e-14 82.0 89 51.7
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 2.9e-14 82.0 113 47.8
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 3.8e-14 81.6 57 66.7
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 6.5e-14 80.9 62 61.3
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 6.5e-14 80.9 108 44.4
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 6.5e-14 80.9 73 56.2
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 8.5e-14 80.5 59 64.4
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 8.5e-14 80.5 61 70.5
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 1.1e-13 80.1 68 58.8
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 1.1e-13 80.1 90 52.2
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 1.1e-13 80.1 74 58.1
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 1.4e-13 79.7 68 58.8
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.9e-13 79.3 114 44.7
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.9e-13 79.3 114 44.7
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 1.9e-13 79.3 68 57.4
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 3.2e-13 78.6 68 64.7
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 4.2e-13 78.2 86 53.5
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 4.2e-13 78.2 92 50.0
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 5.5e-13 77.8 116 43.1
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 5.5e-13 77.8 63 66.7
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 7.2e-13 77.4 120 42.5
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 7.2e-13 77.4 102 48.0
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 9.4e-13 77.0 111 43.2
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 9.4e-13 77.0 106 46.2
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 1.2e-12 76.6 89 50.6
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 1.2e-12 76.6 68 58.8
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 1.6e-12 76.3 110 42.7
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.6e-12 76.3 92 50.0
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 2.1e-12 75.9 80 53.8
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.1e-12 75.9 115 44.3
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 2.1e-12 75.9 113 41.6
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 2.1e-12 75.9 113 39.8
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 2.1e-12 75.9 66 65.2
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 3.6e-12 75.1 82 53.7
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 4.6e-12 74.7 77 54.5
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 6.1e-12 74.3 65 61.5
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 6.1e-12 74.3 124 39.5
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 7.9e-12 73.9 64 62.5
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 1.0e-11 73.6 64 64.1
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 1.8e-11 72.8 95 45.3
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 1.8e-11 72.8 95 45.3
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 1.8e-11 72.8 88 50.0
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 2.3e-11 72.4 64 62.5
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 3.0e-11 72.0 56 66.1
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 3.9e-11 71.6 63 57.1
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 6.7e-11 70.9 92 45.7
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 6.7e-11 70.9 95 43.2
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 6.7e-11 70.9 92 45.7
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 6.7e-11 70.9 92 45.7
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 8.8e-11 70.5 95 43.2
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 8.8e-11 70.5 69 59.4
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 3.3e-10 68.6 64 53.1
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 5.7e-10 67.8 71 54.9
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 7.4e-10 67.4 59 59.3
CANSAT25G2317 Cannabis sativa HOM05D007107 ORTHO05D009198 7.4e-10 67.4 78 51.3
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 1.3e-09 66.6 70 52.9
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 1.3e-09 66.6 96 42.7
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 2.8e-09 65.5 63 54.0
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 3.7e-09 65.1 62 53.2
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 3.7e-09 65.1 95 42.1
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 3.7e-09 65.1 95 42.1
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 8.2e-09 63.9 63 54.0
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 8.2e-09 63.9 76 51.3
Oeu008318.1 Olea europaea HOM05D007107 ORTHO05D009198 1.4e-08 63.2 56 66.1
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 1.8e-08 62.8 61 59.0
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.8e-08 62.8 61 59.0
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 3.1e-08 62.0 77 49.4
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 4.1e-08 61.6 61 60.7
SalBow6G0491 Salvia bowleyana HOM05D007107 ORTHO05D009198 4.1e-08 61.6 55 61.8
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 4.1e-08 61.6 58 58.6
ECA240G1449 Erigeron canadensis HOM05D007107 ORTHO05D009198 9.1e-08 60.5 49 65.3
Lalb_Chr25g0278741 Lupinus albus HOM05D007107 ORTHO05D009198 1.2e-07 60.1 68 47.1
unitig_27.g25075 Utricularia gibba HOM05D007107 ORTHO05D009198 5.9e-07 57.8 51 62.7
BcaB04g19054 Brassica carinata HOM05D007107 ORTHO05D009198 7.7e-07 57.4 101 43.6


User provided reference genes

Program Settings