Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 1.0e-57 226.5 113 100.0
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 9.7e-56 219.9 119 95.0
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 2.4e-46 188.7 107 89.7
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 5.5e-43 177.6 113 78.8
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 4.1e-38 161.4 112 77.7
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 5.9e-37 157.5 113 73.5
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 5.5e-35 151.0 112 71.4
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 6.8e-33 144.1 103 71.8
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 7.5e-32 140.6 82 82.9
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 2.7e-29 132.1 103 69.9
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 2.0e-21 105.9 106 60.4
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 5.0e-20 101.3 116 54.3
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 5.0e-20 101.3 117 48.7
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 1.5e-19 99.8 65 78.5
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 6.2e-18 94.4 66 72.7
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 8.0e-18 94.0 64 71.9
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 8.0e-18 94.0 114 50.0
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 5.2e-17 91.3 122 46.7
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 5.2e-17 91.3 68 70.6
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 6.8e-17 90.9 121 47.1
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 1.2e-16 90.1 109 47.7
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 1.2e-16 90.1 115 52.2
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 2.0e-16 89.4 110 45.5
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 2.6e-16 89.0 70 64.3
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 3.4e-16 88.6 109 47.7
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 5.8e-16 87.8 57 71.9
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 5.8e-16 87.8 95 54.7
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 9.8e-16 87.0 57 70.2
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 9.8e-16 87.0 86 57.0
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 9.8e-16 87.0 117 57.3
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 1.7e-15 86.3 120 44.2
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 1.7e-15 86.3 68 63.2
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 2.2e-15 85.9 61 75.4
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 2.2e-15 85.9 68 61.8
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 2.9e-15 85.5 109 44.0
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 3.7e-15 85.1 112 46.4
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 6.4e-15 84.3 62 66.1
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 6.4e-15 84.3 68 64.7
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 1.4e-14 83.2 91 54.9
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 1.4e-14 83.2 114 43.9
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 1.9e-14 82.8 83 54.2
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.9e-14 82.8 122 47.5
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.9e-14 82.8 122 46.7
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 1.9e-14 82.8 75 65.3
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 2.4e-14 82.4 114 47.4
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 2.4e-14 82.4 118 42.4
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 3.2e-14 82.0 88 53.4
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 3.2e-14 82.0 73 56.2
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 4.1e-14 81.6 88 53.4
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 5.4e-14 81.3 69 63.8
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 5.4e-14 81.3 64 65.6
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 7.0e-14 80.9 117 42.7
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 9.2e-14 80.5 95 49.5
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 1.6e-13 79.7 58 70.7
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 2.0e-13 79.3 112 44.6
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 2.0e-13 79.3 59 66.1
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 2.0e-13 79.3 96 49.0
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.7e-13 79.0 89 53.9
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 3.5e-13 78.6 76 63.2
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 4.6e-13 78.2 123 43.1
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 4.6e-13 78.2 83 56.6
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 4.6e-13 78.2 118 39.8
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 7.8e-13 77.4 85 55.3
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 7.8e-13 77.4 68 64.7
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 1.7e-12 76.3 66 68.2
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 2.3e-12 75.9 86 53.5
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 3.9e-12 75.1 68 61.8
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 5.0e-12 74.7 64 62.5
CANSAT25G2317 Cannabis sativa HOM05D007107 ORTHO05D009198 1.9e-11 72.8 118 43.2
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 1.9e-11 72.8 56 69.6
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 3.3e-11 72.0 63 57.1
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 3.3e-11 72.0 70 57.1
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 4.3e-11 71.6 64 64.1
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 2.1e-10 69.3 63 55.6
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 2.1e-10 69.3 63 55.6
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 6.2e-10 67.8 89 49.4
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 8.1e-10 67.4 62 54.8
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 8.1e-10 67.4 74 55.4
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 8.1e-10 67.4 74 55.4
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 8.1e-10 67.4 91 49.5
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 1.1e-09 67.0 77 49.4
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 1.1e-09 67.0 77 49.4
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 1.1e-09 67.0 77 49.4
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 1.4e-09 66.6 92 45.7
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 1.4e-09 66.6 92 45.7
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 2.3e-09 65.9 63 54.0
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 2.3e-09 65.9 63 54.0
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 3.1e-09 65.5 63 54.0
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 3.1e-09 65.5 63 55.6
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 4.0e-09 65.1 59 61.0
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 4.0e-09 65.1 74 50.0
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 4.0e-09 65.1 67 55.2
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 1.2e-08 63.5 64 50.0
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 3.4e-08 62.0 88 47.7
ECA240G1449 Erigeron canadensis HOM05D007107 ORTHO05D009198 2.2e-07 59.3 49 63.3
Oeu008318.1 Olea europaea HOM05D007107 ORTHO05D009198 2.2e-07 59.3 56 66.1
Lalb_Chr25g0278741 Lupinus albus HOM05D007107 ORTHO05D009198 3.7e-07 58.5 68 45.6
BcaB04g19054 Brassica carinata HOM05D007107 ORTHO05D009198 6.4e-07 57.8 57 54.4
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 6.4e-07 57.8 81 49.4
FAN24G0803 Fragaria x ananassa HOM05D007107 ORTHO05D025431 9.2e-06 53.9 71 50.7


User provided reference genes

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