Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 1.6e-180 636.0 327 100.0
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 3.8e-177 624.8 327 98.2
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 1.1e-168 596.7 337 92.9
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 1.3e-148 530.0 337 83.4
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 3.2e-136 488.8 314 82.2
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 1.8e-123 446.4 304 76.6
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 4.0e-78 295.8 169 86.4
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 9.0e-78 294.7 333 53.5
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 3.4e-77 292.7 337 53.1
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 1.5e-69 267.3 338 50.3
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 2.5e-67 260.0 336 49.1
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 7.4e-64 248.4 344 49.7
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 4.0e-62 242.7 371 46.1
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 1.5e-61 240.7 336 49.1
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 1.5e-61 240.7 339 47.2
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 6.5e-60 235.3 344 46.5
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 4.2e-59 232.6 356 46.3
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 9.3e-59 231.5 350 47.1
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 3.9e-57 226.1 336 48.2
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 7.4e-56 221.9 342 45.0
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 6.3e-55 218.8 338 44.7
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 9.0e-54 214.9 345 43.2
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 9.0e-54 214.9 337 46.9
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 1.2e-53 214.5 347 43.5
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 3.4e-53 213.0 334 47.0
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 4.5e-53 212.6 351 45.9
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 7.7e-53 211.8 337 47.2
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 2.9e-52 209.9 330 43.3
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 1.9e-51 207.2 330 43.6
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 7.2e-51 205.3 348 44.3
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 9.4e-51 204.9 352 44.0
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 9.4e-51 204.9 348 44.3
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 4.6e-50 202.6 344 43.0
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 1.8e-49 200.7 338 43.2
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 1.5e-48 197.6 351 42.5
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 2.0e-48 197.2 315 46.7
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 7.4e-48 195.3 342 43.6
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 9.7e-48 194.9 313 44.7
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 9.7e-48 194.9 335 40.6
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 2.2e-47 193.7 330 41.2
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 2.2e-47 193.7 315 47.3
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.2e-45 188.0 333 42.3
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 1.5e-45 187.6 341 43.1
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 1.5e-45 187.6 316 45.9
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 2.0e-45 187.2 352 42.0
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 3.8e-44 183.0 328 41.2
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 3.8e-44 183.0 328 41.2
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 1.1e-43 181.4 347 40.1
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 3.2e-43 179.9 349 41.5
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 9.4e-43 178.3 328 43.0
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 1.6e-42 177.6 400 37.5
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 8.8e-41 171.8 352 39.2
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 7.4e-40 168.7 328 39.6
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 4.8e-39 166.0 330 42.1
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 4.1e-38 162.9 330 43.3
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 5.3e-38 162.5 316 40.2
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 1.2e-37 161.4 375 38.4
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 7.7e-37 158.7 324 40.4
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 9.4e-35 151.8 332 38.3
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 1.8e-33 147.5 337 37.1
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 2.3e-33 147.1 324 39.5
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 8.8e-33 145.2 268 39.6
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 8.8e-33 145.2 328 39.0
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 8.8e-33 145.2 303 39.3
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 2.6e-32 143.7 327 37.3
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 4.4e-32 142.9 339 39.5
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 1.7e-31 141.0 335 38.2
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 2.8e-31 140.2 350 36.9
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 3.7e-31 139.8 415 33.0
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 1.4e-30 137.9 339 39.8
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 1.8e-30 137.5 332 36.7
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 2.4e-30 137.1 318 36.5
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 4.1e-30 136.3 326 38.3
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 1.6e-29 134.4 342 35.4
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 1.6e-29 134.4 330 37.3
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 2.0e-29 134.0 345 37.1
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 2.6e-29 133.7 328 38.1
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 1.7e-28 131.0 329 34.3
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 3.2e-27 126.7 261 39.1
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 4.2e-27 126.3 213 44.1
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 5.5e-27 125.9 337 36.8
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 5.5e-27 125.9 285 41.4
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 1.2e-26 124.8 327 34.6
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 1.0e-25 121.7 333 36.0
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 1.4e-25 121.3 332 35.5
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 2.3e-25 120.6 148 52.7
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 8.8e-25 118.6 222 35.6
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 8.8e-25 118.6 220 41.4
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 1.5e-24 117.9 193 43.5
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 2.6e-24 117.1 252 39.7
Nitab4.5_0003739g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 2.6e-24 117.1 70 85.7
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 7.5e-24 115.5 326 33.1
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 3.1e-22 110.2 331 36.0
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 3.1e-22 110.2 333 33.9
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 4.1e-22 109.8 323 32.2
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 7.0e-22 109.0 328 34.5
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 4.5e-21 106.3 352 34.7
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 7.7e-21 105.5 261 35.6
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 2.9e-20 103.6 329 34.3
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 5.0e-20 102.8 329 34.3
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 1.5e-19 101.3 328 32.6
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 4.2e-19 99.8 339 34.2
AUR62025214 Chenopodium quinoa HOM05D000052 ORTHO05D007607 5.5e-19 99.4 197 36.0
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 2.1e-18 97.4 321 32.4
Atru.chr5.2357 Acer truncatum HOM05D006273 ORTHO05D007607 8.0e-18 95.5 241 39.0
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 1.0e-17 95.1 214 36.9
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 1.8e-17 94.4 347 32.9
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 2.3e-17 94.0 143 43.4
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 1.2e-16 91.7 200 34.0
Aa31LG8G6430 Aethionema arabicum HOM05D006273 ORTHO05D007607 1.7e-15 87.8 312 33.7
Os03g0203000 Oryza sativa ssp. japonica HOM05D006273 ORTHO05D007607 1.7e-15 87.8 311 30.9
CDE04G2504 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 2.2e-15 87.4 296 31.8
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 5.4e-14 82.8 340 32.4
Dinv15806 Davidia involucrata HOM05D006273 ORTHO05D007607 2.3e-12 77.4 68 64.7
Aqoxy6G02626 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 2.5e-11 73.9 264 30.7
Zm00001eb007690 Zea mays HOM05D006273 ORTHO05D007607 4.2e-11 73.2 338 29.3
Oeu037282.1 Olea europaea HOM05D006273 ORTHO05D007607 2.1e-10 70.9 239 33.1
Dinv15805 Davidia involucrata HOM05D006273 ORTHO05D007607 3.6e-10 70.1 121 40.5
SEGI_25142 Sequoiadendron giganteum HOM05D006273 ORTHO05D007607 5.2e-09 66.2 229 30.6
Actinidia27988 Actinidia chinensis HOM05D006273 ORTHO05D007607 1.1e-06 58.5 48 70.8
AL3G33090 Arabidopsis lyrata HOM05D006273 ORTHO05D007607 2.4e-06 57.4 336 28.6


User provided reference genes

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