Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 3.6e-91 338.2 165 100.0
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 2.3e-90 335.5 165 99.4
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 1.8e-87 325.9 165 94.5
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 7.7e-86 320.5 165 93.3
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 1.6e-83 312.8 158 97.5
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 3.6e-83 311.6 165 90.9
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 4.0e-82 308.1 161 91.3
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 3.0e-74 282.0 161 81.4
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 7.5e-73 277.3 161 79.5
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 9.8e-73 276.9 165 77.0
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 9.8e-73 276.9 163 77.9
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.3e-72 276.6 161 78.9
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 2.2e-72 275.8 165 75.8
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 3.7e-72 275.0 165 77.6
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 4.9e-72 274.6 161 78.3
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 4.9e-72 274.6 165 75.8
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 6.3e-72 274.2 165 75.8
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 1.1e-71 273.5 162 79.0
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 1.6e-70 269.6 161 75.8
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 1.6e-70 269.6 165 74.5
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 1.6e-70 269.6 161 76.4
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 2.0e-70 269.2 161 76.4
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 2.0e-70 269.2 161 76.4
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 2.0e-70 269.2 165 72.7
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 2.7e-70 268.9 161 76.4
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 2.7e-70 268.9 161 76.4
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 5.9e-70 267.7 165 74.5
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 7.7e-70 267.3 165 72.7
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 7.7e-70 267.3 165 73.9
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 1.0e-69 266.9 165 74.5
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 1.3e-69 266.5 161 75.8
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 1.7e-69 266.2 165 73.9
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 2.3e-69 265.8 161 75.8
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 2.9e-69 265.4 165 70.9
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 2.9e-69 265.4 162 72.8
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 3.8e-69 265.0 163 76.7
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 3.8e-69 265.0 163 73.6
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 3.8e-69 265.0 165 73.3
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 6.6e-69 264.2 165 73.3
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 6.6e-69 264.2 165 72.7
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 8.6e-69 263.8 165 72.7
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 1.1e-68 263.5 165 73.3
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 1.1e-68 263.5 159 76.1
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 1.5e-68 263.1 161 74.5
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 2.5e-68 262.3 165 74.5
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 2.5e-68 262.3 165 73.3
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 3.3e-68 261.9 164 73.8
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 4.3e-68 261.5 164 72.6
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 5.6e-68 261.2 162 74.1
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 5.6e-68 261.2 162 72.2
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 9.5e-68 260.4 161 74.5
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 1.2e-67 260.0 161 72.0
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 2.8e-67 258.8 165 71.5
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 6.1e-67 257.7 163 70.6
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 6.1e-67 257.7 163 72.4
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 8.0e-67 257.3 164 73.2
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 1.0e-66 256.9 161 73.9
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 1.0e-66 256.9 165 71.5
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 1.4e-66 256.5 162 72.8
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 1.8e-66 256.1 161 71.4
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 1.8e-66 256.1 161 70.8
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 2.3e-66 255.8 165 70.9
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 2.3e-66 255.8 161 72.7
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 3.0e-66 255.4 163 69.3
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 3.0e-66 255.4 161 73.3
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 4.0e-66 255.0 163 68.7
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 5.2e-66 254.6 161 70.8
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 6.8e-66 254.2 161 73.3
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 6.8e-66 254.2 165 70.3
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 6.8e-66 254.2 158 72.2
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 8.9e-66 253.8 161 70.8
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 2.6e-65 252.3 164 70.7
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 1.7e-64 249.6 154 74.0
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 4.1e-63 245.0 156 71.8
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 4.1e-63 245.0 156 71.8
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 9.2e-63 243.8 165 67.3
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 1.3e-61 240.0 165 66.7
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 1.3e-61 240.0 159 69.8
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 1.5e-60 236.5 161 65.8
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 2.1e-59 232.6 165 67.3
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 8.9e-58 227.3 161 62.1
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 3.4e-57 225.3 161 62.1
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 3.4e-57 225.3 161 62.1
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 3.4e-57 225.3 161 62.1
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 3.4e-57 225.3 161 62.1
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 3.4e-57 225.3 161 62.1
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 7.5e-57 224.2 161 61.5
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 1.3e-56 223.4 161 61.5
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 3.7e-56 221.9 140 69.3
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 3.7e-56 221.9 157 61.8
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 8.3e-56 220.7 161 62.1
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 4.1e-55 218.4 159 65.4
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 4.1e-55 218.4 163 62.0
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 4.6e-54 214.9 161 59.0
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 1.1e-52 210.3 175 56.0
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 9.5e-52 207.2 163 58.9
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 1.1e-50 203.8 164 57.9
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 2.9e-48 195.7 161 55.9
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 1.4e-47 193.4 122 72.1
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 1.6e-46 189.9 112 81.2
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 7.8e-46 187.6 145 57.9
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 1.2e-41 173.7 108 75.0
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 2.6e-41 172.6 122 71.3
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 4.4e-41 171.8 161 50.9
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 1.3e-40 170.2 109 76.1
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 1.3e-40 170.2 111 73.9
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 1.9e-39 166.4 110 71.8
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 2.4e-39 166.0 164 48.8
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 2.3e-37 159.5 164 45.7
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 2.1e-35 152.9 111 64.9
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 3.8e-32 142.1 90 71.1
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 9.3e-31 137.5 127 52.8
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 4.5e-25 118.6 113 50.4
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 1.2e-22 110.5 161 37.9
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 1.3e-21 107.1 195 30.3
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 8.1e-19 97.8 160 35.0
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 8.1e-19 97.8 53 75.5
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.0e-17 93.2 55 70.9
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 9.9e-17 90.9 56 67.9
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 4.9e-16 88.6 64 64.1
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 4.9e-16 88.6 64 64.1
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 1.5e-12 77.0 54 63.0
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 1.9e-07 60.1 38 73.7


User provided reference genes

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