Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 1.8e-159 565.8 286 100.0
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 1.7e-157 559.3 285 99.3
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 4.7e-139 498.0 312 82.7
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 2.4e-135 485.7 284 85.9
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 9.1e-135 483.8 301 82.1
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 1.4e-114 416.8 257 81.3
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 1.8e-114 416.4 278 74.1
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 2.9e-112 409.1 285 72.6
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 8.3e-112 407.5 292 73.3
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 1.9e-111 406.4 270 74.8
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 5.4e-111 404.8 276 74.3
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 7.0e-111 404.4 276 73.2
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 9.2e-111 404.1 276 72.5
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 1.0e-109 400.6 282 73.0
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 1.0e-109 400.6 284 70.4
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.7e-109 399.8 281 71.5
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 2.3e-109 399.4 277 71.8
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 3.3e-108 395.6 281 70.1
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 7.3e-108 394.4 282 72.0
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 2.1e-107 392.9 283 71.4
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 2.8e-107 392.5 293 70.3
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 4.7e-107 391.7 283 71.4
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 4.0e-106 388.7 286 68.9
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 5.2e-106 388.3 285 69.1
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 1.2e-105 387.1 261 71.6
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 3.4e-105 385.6 294 67.3
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 9.8e-105 384.0 264 71.6
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 9.8e-105 384.0 265 69.1
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 4.9e-104 381.7 280 68.9
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 6.4e-104 381.3 259 71.4
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 8.3e-104 380.9 282 67.4
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 8.3e-104 380.9 276 69.6
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 1.9e-103 379.8 278 66.9
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 4.1e-103 378.6 281 66.9
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 5.4e-103 378.3 312 64.4
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 7.1e-103 377.9 270 70.4
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 9.2e-103 377.5 278 66.5
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 9.2e-103 377.5 278 66.5
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.2e-102 377.1 281 68.3
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 1.6e-102 376.7 254 72.0
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 2.1e-102 376.3 281 68.3
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 7.8e-102 374.4 281 65.5
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 1.7e-101 373.2 278 66.9
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 3.9e-101 372.1 276 66.7
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 3.9e-101 372.1 281 64.8
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 5.1e-101 371.7 272 69.1
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 6.6e-101 371.3 275 67.6
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.9e-100 369.8 309 63.4
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 3.3e-100 369.0 275 67.6
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 3.3e-100 369.0 317 60.6
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 4.3e-100 368.6 276 65.9
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 7.3e-100 367.9 248 69.4
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 9.5e-100 367.5 267 66.3
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 2.1e-99 366.3 276 66.7
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 3.6e-99 365.5 278 65.5
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 4.7e-99 365.2 267 65.9
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 8.1e-99 364.4 268 65.7
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 8.1e-99 364.4 262 68.7
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 4.0e-98 362.1 228 75.4
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 4.0e-98 362.1 228 74.6
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 1.2e-97 360.5 229 75.5
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.5e-97 360.1 259 71.4
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 1.5e-97 360.1 278 66.5
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 1.5e-97 360.1 255 70.2
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 3.4e-97 359.0 294 61.9
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 1.3e-96 357.1 281 65.5
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 1.7e-96 356.7 299 61.5
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 3.7e-96 355.5 225 75.6
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 1.1e-95 354.0 250 68.0
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 1.4e-95 353.6 225 74.7
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 1.4e-95 353.6 295 62.0
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 1.9e-95 353.2 295 61.7
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 1.9e-95 353.2 271 66.1
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 9.2e-95 350.9 255 68.2
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 1.2e-94 350.5 300 61.0
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 4.6e-94 348.6 280 62.1
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 1.0e-93 347.4 280 61.4
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 8.6e-93 344.4 275 63.3
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 4.7e-91 338.6 226 72.1
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 6.2e-91 338.2 230 68.3
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 2.6e-89 332.8 203 79.3
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 2.4e-87 326.2 278 61.2
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 1.2e-86 323.9 281 59.8
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 1.1e-84 317.4 218 68.3
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 1.3e-83 313.9 217 71.4
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 5.3e-82 308.5 230 67.0
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 1.1e-79 300.8 208 68.3
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 4.6e-78 295.4 205 70.7
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 3.0e-77 292.7 203 71.4
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 4.8e-75 285.4 265 58.1
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 6.4e-72 275.0 276 51.4
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 8.4e-72 274.6 201 66.7
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 1.1e-68 264.2 181 68.5
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 3.3e-68 262.7 246 53.7
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 3.7e-67 259.2 279 50.5
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 1.4e-66 257.3 219 61.6
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 4.0e-66 255.8 267 47.9
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 2.9e-64 249.6 165 71.5
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 3.9e-61 239.2 196 63.8
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 3.3e-60 236.1 261 47.1
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 5.3e-58 228.8 243 48.6
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 5.3e-50 202.2 283 45.9
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 1.9e-47 193.7 286 41.6
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 3.2e-47 193.0 118 77.1
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 6.3e-35 152.1 111 66.7
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 2.2e-32 143.7 185 41.6
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 1.4e-29 134.4 99 66.7
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 8.8e-29 131.7 99 62.6
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 1.3e-24 117.9 339 28.3
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 2.2e-24 117.1 299 32.4
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 9.1e-18 95.1 124 45.2
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.3e-16 91.3 102 49.0
PGSC0003DMG402025733 Solanum tuberosum HOM05D001568 ORTHO05D008804 1.2e-14 84.7 52 90.4
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 6.8e-13 79.0 49 75.5
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 5.9e-09 65.9 80 46.2
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 8.6e-08 62.0 50 52.0
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 1.5e-07 61.2 50 50.0
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 1.5e-07 61.2 50 50.0
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 1.5e-07 61.2 50 50.0
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 4.3e-07 59.7 34 76.5


User provided reference genes

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