Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 0.0e+00 1334.3 790 100.0
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 0.0e+00 1288.9 790 97.1
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 0.0e+00 1127.1 825 81.1
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 4.8e-210 735.3 869 60.0
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.7e-205 719.5 882 58.7
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 2.5e-190 669.8 924 57.7
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 9.3e-129 465.3 742 47.7
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 1.1e-113 415.2 833 42.0
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 8.7e-111 405.6 878 41.0
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 9.0e-108 395.6 810 40.2
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 7.9e-104 382.5 880 40.2
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 1.8e-95 354.8 852 37.7
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 1.1e-94 352.1 881 36.5
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 2.0e-94 351.3 853 39.6
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.2e-88 332.0 915 38.3
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 8.8e-87 325.9 873 35.9
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 5.0e-82 310.1 882 38.5
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 8.5e-82 309.3 893 36.3
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 3.2e-81 307.4 891 39.3
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 1.0e-79 302.4 867 34.5
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 2.3e-79 301.2 1045 33.0
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 4.0e-79 300.4 818 37.5
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 5.2e-79 300.1 818 37.5
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 1.5e-78 298.5 870 34.4
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 3.3e-78 297.4 911 34.0
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 2.2e-77 294.7 931 35.7
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.4e-76 292.0 907 34.2
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 2.7e-75 287.7 846 37.4
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 2.5e-73 281.2 360 55.8
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 9.4e-73 279.3 884 33.8
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.6e-72 278.5 968 35.2
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.6e-72 278.5 865 33.4
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 3.6e-72 277.3 816 35.2
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 8.0e-72 276.2 805 32.5
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 8.8e-71 272.7 860 36.4
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.7e-69 267.3 864 34.1
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.4e-68 265.4 889 34.1
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 5.4e-68 263.5 895 32.0
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.2e-67 262.3 888 31.0
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 1.7e-66 258.5 878 32.8
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 4.0e-63 247.3 906 30.6
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 4.4e-62 243.8 860 32.8
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 3.7e-61 240.7 864 34.3
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 1.1e-60 239.2 860 32.4
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 1.8e-60 238.4 246 63.8
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 2.9e-58 231.1 869 31.9
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 6.6e-58 229.9 867 31.6
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.1e-57 229.2 876 32.8
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.6e-56 225.3 875 32.8
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.3e-55 221.5 866 31.1
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.0e-55 221.1 872 33.5
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 5.2e-55 220.3 863 31.7
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 2.0e-54 218.4 856 31.8
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 9.8e-54 216.1 848 32.9
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 1.3e-53 215.7 946 30.1
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 2.2e-53 214.9 874 30.5
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 1.2e-51 209.1 325 48.6
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 6.6e-50 203.4 903 31.5
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.6e-50 203.4 856 30.3
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.1e-49 202.6 891 29.4
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.5e-49 202.2 918 30.1
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.9e-49 201.8 900 29.8
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 4.3e-49 200.7 892 32.1
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 2.1e-48 198.4 876 30.5
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 1.1e-47 196.1 279 51.6
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 1.4e-47 195.7 972 28.9
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.4e-47 195.7 853 29.4
Nitab4.5_0000575g0060 Nicotiana tabacum HOM05D004628 ORTHO05D005166 6.8e-47 193.4 498 40.4
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 7.5e-46 189.9 266 57.1
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 2.2e-45 188.3 887 29.1
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 2.2e-45 188.3 474 37.6
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 4.9e-45 187.2 865 29.4
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 8.3e-45 186.4 942 32.3
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 1.1e-44 186.0 177 66.1
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.2e-44 184.5 791 30.0
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 3.2e-44 184.5 786 34.1
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 9.2e-44 183.0 927 28.3
CAN.G606.82 Capsicum annuum HOM05D004628 ORTHO05D005166 1.6e-43 182.2 344 45.9
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 2.0e-43 181.8 910 30.9
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 8.6e-42 176.4 934 28.3
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 1.1e-41 176.0 898 30.8
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.3e-41 174.5 797 27.9
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 4.3e-41 174.1 936 30.9
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 7.3e-41 173.3 880 30.0
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 1.4e-39 169.1 866 30.6
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 8.9e-39 166.4 901 28.3
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 5.8e-38 163.7 812 29.8
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 7.5e-38 163.3 882 29.1
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 7.5e-38 163.3 959 30.0
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 1.7e-37 162.2 914 34.7
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.9e-37 161.4 786 28.6
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 2.9e-37 161.4 877 31.9
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 3.7e-37 161.0 133 70.7
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.4e-36 158.3 823 27.9
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 3.2e-36 157.9 946 28.9
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 1.6e-35 155.6 797 31.0
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 6.0e-35 153.7 785 28.0
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 7.8e-35 153.3 962 27.1
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 7.8e-35 153.3 813 28.3
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 1.7e-34 152.1 792 30.3
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 1.1e-33 149.4 797 31.1
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 9.5e-33 146.4 789 27.8
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.2e-32 146.0 284 39.1
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 1.6e-32 145.6 879 28.9
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 6.2e-32 143.7 819 26.6
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 6.2e-32 143.7 941 29.8
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 1.8e-31 142.1 926 28.3
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 4.0e-31 141.0 818 26.5
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 6.8e-31 140.2 951 32.2
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 1.5e-30 139.0 821 26.7
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 9.9e-30 136.3 848 26.3
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 9.9e-30 136.3 497 32.2
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 6.4e-29 133.7 826 26.2
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 8.4e-29 133.3 147 58.5
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 2.4e-28 131.7 812 26.1
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 4.1e-28 131.0 885 25.5
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 7.1e-28 130.2 916 26.4
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 9.2e-28 129.8 167 53.9
CAN.G1164.3 Capsicum annuum HOM05D009846 ORTHO05D002235 9.2e-28 129.8 153 56.9
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 9.2e-28 129.8 85 84.7
Sopen07g020760 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-28 129.8 129 58.1
Solyc07g041350.1 Solanum lycopersicum HOM05D004628 ORTHO05D005166 2.1e-27 128.6 86 76.7
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 4.6e-27 127.5 199 45.2
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 4.6e-27 127.5 865 26.6
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 6.6e-26 123.6 876 28.4
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 4.3e-25 120.9 886 27.1
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 3.6e-24 117.9 983 25.7
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.1e-23 116.3 870 26.1
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 4.0e-23 114.4 261 38.3
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 9.0e-23 113.2 225 38.2
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 6.4e-21 107.1 894 26.1
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 6.4e-21 107.1 882 23.5
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 3.5e-19 101.3 892 25.2
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 2.3e-18 98.6 875 28.6
Sopen01g008110 Solanum pennellii HOM05D000004 ORTHO05D000034 2.3e-18 98.6 78 71.8
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 3.0e-18 98.2 895 27.7
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 5.1e-18 97.4 918 24.7
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 9.6e-17 93.2 267 34.5
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 3.6e-16 91.3 907 24.7
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 3.4e-14 84.7 67 70.1
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 1.3e-13 82.8 162 38.3
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 2.2e-13 82.0 852 25.1
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 1.4e-12 79.3 192 37.0
CAN.G1627.4 Capsicum annuum HOM05D004628 ORTHO05D005166 7.1e-12 77.0 40 92.5
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 1.2e-11 76.3 192 34.9
Sopen01g028500 Solanum pennellii HOM05D003617 ORTHO05D000001 2.7e-11 75.1 63 63.5
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 7.9e-11 73.6 280 32.1
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.3e-10 72.0 56 64.3
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 5.1e-10 70.9 950 24.2
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 5.6e-09 67.4 190 34.2
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 9.6e-09 66.6 234 29.9
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 9.6e-09 66.6 257 31.9
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 9.6e-09 66.6 975 25.2
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 2.1e-08 65.5 241 32.8
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.1e-08 65.5 199 33.2
Lj9A514T51 Lonicera japonica HOM05D008208 ORTHO05D010143 6.2e-08 63.9 255 31.0
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.1e-07 63.2 43 65.1
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.1e-07 61.6 43 65.1
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 9.0e-07 60.1 200 33.0
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 2.0e-06 58.9 258 30.2
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 2.0e-06 58.9 230 31.3
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 4.5e-06 57.8 266 28.2
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 5.8e-06 57.4 257 28.8
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 9.9e-06 56.6 757 22.6


User provided reference genes

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