Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 0.0e+00 1261.1 670 100.0
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 0.0e+00 1238.0 670 98.1
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 0.0e+00 1174.8 673 93.5
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 4.2e-263 911.4 703 72.5
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 4.3e-260 901.4 710 71.7
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 3.1e-234 815.5 695 68.1
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 5.0e-115 419.5 754 40.6
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.5e-111 407.1 715 44.2
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 3.3e-111 406.8 560 48.0
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 7.4e-111 405.6 775 39.9
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.9e-106 391.0 783 38.4
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 2.4e-101 374.0 697 41.9
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 2.0e-100 370.9 729 40.1
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.2e-99 367.5 667 41.1
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 5.0e-99 366.3 640 42.8
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.4e-96 358.2 705 39.7
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 1.7e-94 351.3 726 37.7
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 4.8e-94 349.7 769 37.1
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 5.0e-91 339.7 744 36.2
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 2.3e-88 330.9 741 36.3
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 6.7e-88 329.3 673 39.1
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 4.1e-85 320.1 723 36.9
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 9.1e-85 318.9 737 36.1
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 9.1e-85 318.9 737 36.1
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 2.7e-84 317.4 731 36.9
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 5.9e-84 316.2 727 36.3
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 1.5e-82 311.6 705 36.0
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 1.9e-82 311.2 741 37.2
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.5e-82 310.8 738 35.0
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 9.4e-82 308.9 734 35.6
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.2e-81 308.5 682 38.6
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 2.1e-81 307.8 755 35.1
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 4.7e-81 306.6 754 36.2
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 6.8e-80 302.8 765 33.6
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 2.0e-79 301.2 758 34.7
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 2.0e-79 301.2 510 43.1
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.6e-79 300.8 780 34.0
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 5.7e-79 299.7 689 36.4
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 5.7e-79 299.7 654 37.5
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 2.2e-78 297.7 681 36.6
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 6.3e-78 296.2 670 36.7
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.1e-77 295.4 741 34.8
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.4e-77 295.0 677 37.5
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.4e-77 295.0 751 34.0
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 1.8e-77 294.7 688 35.8
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 2.4e-77 294.3 519 40.8
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 5.4e-77 293.1 688 36.3
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.0e-76 291.2 786 34.1
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 7.7e-76 289.3 734 34.5
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 9.5e-74 282.3 634 40.5
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 1.6e-73 281.6 692 33.5
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 2.1e-73 281.2 755 35.0
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.0e-72 277.3 811 32.2
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 5.2e-72 276.6 517 40.8
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 8.8e-72 275.8 714 35.7
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 1.1e-69 268.9 532 37.2
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 1.8e-69 268.1 623 35.6
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 1.8e-69 268.1 621 35.9
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.2e-68 265.4 594 36.5
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 4.5e-68 263.5 792 31.8
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 7.7e-68 262.7 230 59.1
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 3.8e-67 260.4 686 34.5
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 8.6e-67 259.2 335 46.6
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 1.5e-66 258.5 680 33.5
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 5.6e-66 256.5 363 44.6
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 2.1e-65 254.6 717 34.0
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 3.4e-63 247.3 673 33.6
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 3.4e-63 247.3 698 33.1
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 3.4e-63 247.3 738 32.4
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 5.7e-63 246.5 722 33.9
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 1.3e-62 245.4 511 39.7
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 2.2e-62 244.6 660 34.8
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 1.4e-61 241.9 740 31.8
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 2.4e-61 241.1 691 32.9
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 5.4e-61 240.0 725 32.6
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 7.0e-61 239.6 662 32.0
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 9.2e-61 239.2 723 32.8
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 9.2e-61 239.2 686 32.8
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 1.6e-60 238.4 691 31.4
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 7.8e-60 236.1 673 32.4
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 2.3e-59 234.6 713 31.3
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 5.0e-59 233.4 231 55.0
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.1e-58 232.3 692 33.7
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 1.5e-58 231.9 331 46.8
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 1.9e-58 231.5 674 32.3
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 1.9e-58 231.5 723 32.8
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 2.5e-58 231.1 754 32.9
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 3.3e-58 230.7 807 29.7
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 4.3e-58 230.3 812 28.8
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.2e-57 228.8 733 31.5
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 5.2e-56 223.4 674 31.2
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 1.5e-55 221.9 674 30.6
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 4.4e-55 220.3 737 30.4
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 5.8e-55 219.9 674 30.4
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 7.5e-55 219.5 685 32.3
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 2.2e-54 218.0 833 29.9
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 2.2e-54 218.0 562 34.7
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 8.3e-54 216.1 629 30.7
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 2.0e-52 211.5 565 33.3
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 2.7e-52 211.1 662 33.1
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 1.3e-51 208.8 813 27.2
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 3.9e-51 207.2 685 30.8
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 8.6e-51 206.1 555 32.4
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 7.3e-50 203.0 665 31.3
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 7.3e-50 203.0 756 30.4
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.2e-49 202.2 729 30.2
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 3.6e-49 200.7 660 32.1
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 5.2e-48 196.8 308 43.2
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 5.4e-45 186.8 734 28.7
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 2.7e-44 184.5 659 29.3
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 4.7e-33 147.1 422 33.2
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 3.1e-32 144.4 644 28.7
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 5.2e-32 143.7 644 28.7
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 7.6e-31 139.8 618 27.0
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 3.8e-30 137.5 515 28.7
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 4.6e-28 130.6 571 28.5
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 1.0e-27 129.4 91 71.4
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 8.7e-27 126.3 595 28.2
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 8.1e-25 119.8 121 58.7
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 3.5e-20 104.4 94 56.4
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 1.5e-18 99.0 127 48.8
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.1e-16 92.8 359 31.5
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 2.4e-16 91.7 162 35.2
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.1e-13 82.8 130 43.1
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.1e-12 78.6 412 26.5
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 4.6e-12 77.4 58 65.5
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 2.3e-11 75.1 153 35.9
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 7.4e-10 70.1 90 47.8
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.3e-09 69.3 120 37.5
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 1.1e-08 66.2 47 68.1
Nn5g30227 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.4e-07 61.2 46 67.4
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 4.5e-07 60.8 50 54.0
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 7.6e-07 60.1 123 35.0
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 7.6e-07 60.1 48 56.2
vmacro05756 Vaccinium macrocarpon HOM05D060962 ORTHO05D005551 1.3e-06 59.3 53 52.8
Nn8g41058 Nelumbo nucifera HOM05D004882 ORTHO05D005551 4.9e-06 57.4 35 71.4


User provided reference genes

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