Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 2352.0 1253 100.0
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 2300.4 1253 97.7
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 2152.1 1239 91.8
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 2034.2 1275 86.1
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1798.1 1256 78.3
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1788.5 1265 77.4
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1535.4 1258 68.3
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1535.4 1266 68.1
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1528.1 1188 68.6
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1527.3 1269 65.3
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1506.5 1259 64.4
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1506.1 1188 67.5
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1493.4 1265 64.1
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1479.5 1196 66.1
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1477.6 1257 67.1
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1449.9 1181 64.7
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1442.9 1229 62.7
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1437.2 1255 61.6
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1436.0 1288 63.0
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1434.1 1257 62.3
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1431.4 1255 61.5
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1426.0 1286 59.8
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1425.6 1260 62.2
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1418.7 1246 61.9
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1416.7 1255 60.2
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1416.4 1283 61.7
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1416.0 1269 61.9
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1412.9 1267 61.6
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1411.0 1259 60.9
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1409.0 1165 64.6
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1409.0 1178 63.8
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1404.8 1277 60.1
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1402.5 1191 63.2
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1400.6 1188 64.1
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1395.9 1256 60.7
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1394.4 1254 59.5
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1391.7 1253 60.3
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1391.7 1253 59.8
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1390.2 1176 63.5
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1389.4 1318 59.3
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1389.0 1230 62.4
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1380.2 1186 61.3
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1380.2 1257 60.5
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1377.8 1173 61.3
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1376.7 1243 60.0
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1374.8 1238 59.7
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1374.4 1220 60.5
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1372.5 1253 59.3
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1368.2 1261 59.1
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1364.7 1257 59.6
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1364.7 1248 60.4
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1363.6 1170 62.2
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1361.7 1226 61.1
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1361.3 1228 59.4
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1360.9 1179 62.3
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1360.9 1247 60.4
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1355.9 1202 60.5
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1355.1 1194 61.6
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1354.7 1172 60.7
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1354.0 1258 59.0
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1348.6 1164 62.1
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1348.2 1190 61.8
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1347.8 1235 60.3
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1346.6 1181 61.3
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1343.9 1189 61.7
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1340.9 1248 59.3
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1340.1 1285 58.0
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1335.5 1262 58.9
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1335.5 1317 56.3
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1335.1 1195 61.2
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1328.9 1225 60.3
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1327.8 1273 58.1
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1323.1 1260 59.2
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1316.2 1243 59.0
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1314.3 1259 57.3
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1312.4 1182 59.0
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1310.0 1235 59.6
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1293.9 1175 60.3
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1286.2 1255 56.1
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1270.8 1255 55.9
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1264.6 1263 55.2
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1261.9 1190 57.9
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1250.0 1187 57.4
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1246.1 1277 54.9
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1243.0 1192 57.0
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1242.3 1186 57.3
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1233.8 1184 56.7
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1231.5 1208 56.0
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1216.4 1184 56.7
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1216.4 1184 56.7
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1215.7 1208 55.5
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1213.7 1189 56.1
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1203.3 1276 52.4
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1187.9 1255 53.3
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1182.5 1165 56.2
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1171.4 1190 55.6
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1170.2 1068 58.5
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1151.7 1177 54.8
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1140.9 1217 54.1
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 4.3e-311 1071.6 943 63.0
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 5.3e-304 1048.1 1316 46.3
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 3.8e-302 1042.0 1238 47.9
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 8.5e-302 1040.8 1183 49.7
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 6.1e-300 1034.6 1093 53.5
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 1.3e-289 1000.3 1268 46.6
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 9.1e-288 994.2 755 69.4
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 1.8e-275 953.4 1228 46.2
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 2.8e-273 946.0 1242 45.4
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 6.0e-239 832.0 670 66.0
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 2.1e-215 753.8 1101 41.9
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 9.6e-205 718.4 1258 39.1
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 1.0e-174 618.6 429 72.3
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 5.3e-171 606.3 825 47.6
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 4.7e-159 566.6 532 60.3
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.2e-151 542.0 1200 34.1
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 5.2e-150 536.6 673 51.6
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.8e-142 511.5 1204 31.6
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 2.3e-142 511.1 1258 31.9
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.3e-140 505.4 1224 31.4
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 2.0e-138 498.0 452 60.0
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 2.0e-138 498.0 441 61.5
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 2.5e-136 491.1 1270 30.6
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.7e-129 468.4 608 44.7
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.7e-129 468.4 1129 31.9
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 2.2e-92 345.1 1298 26.3
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 1.1e-91 342.8 1029 30.9
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 1.9e-83 315.5 1028 29.3
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 1.1e-72 279.6 264 58.0
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.2e-69 269.6 481 36.4
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 1.3e-68 266.2 317 48.6
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 2.9e-68 265.0 481 36.2
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.6e-61 241.9 217 63.1
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.2e-45 189.9 349 37.8
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.7e-37 162.2 128 68.0
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 1.3e-31 143.3 1212 22.2
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 8.3e-31 140.6 1259 22.3
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.6e-29 136.3 121 62.8
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 5.6e-27 127.9 191 45.5
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 1.2e-26 126.7 92 65.2
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 2.1e-26 125.9 138 55.1
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 2.3e-20 105.9 184 38.0
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 4.3e-19 101.7 140 40.0
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 4.0e-17 95.1 73 65.8
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 8.9e-17 94.0 112 50.9
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 8.9e-17 94.0 61 73.8
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 3.7e-15 88.6 71 54.9
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 4.9e-15 88.2 79 58.2
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 6.0e-13 81.3 53 71.7
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 6.0e-13 81.3 53 71.7
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 3.9e-12 78.6 84 46.4
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 1.1e-09 70.5 89 49.4
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 1.5e-08 66.6 67 47.8
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 1.3e-07 63.5 67 47.8
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 1.7e-07 63.2 49 63.3
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 2.4e-06 59.3 41 73.2


User provided reference genes

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