Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g048510 Solanum pennellii HOM05D007794 ORTHO05D009810 2.4e-178 628.6 302 100.0
Solyc01g106130.1 Solanum lycopersicum HOM05D007794 ORTHO05D009810 1.3e-150 536.6 270 94.8
PGSC0003DMG400010680 Solanum tuberosum HOM05D007794 ORTHO05D009810 5.6e-143 511.1 269 89.6
Solyc01g106140.2 Solanum lycopersicum HOM05D007794 ORTHO05D009810 9.7e-127 457.2 262 83.2
Sopen01g048520 Solanum pennellii HOM05D007794 ORTHO05D009810 9.7e-127 457.2 269 82.5
PGSC0003DMG400010679 Solanum tuberosum HOM05D007794 ORTHO05D009810 6.9e-125 451.1 262 82.1
CAN.G1074.4 Capsicum annuum HOM05D007794 ORTHO05D009810 2.2e-118 429.5 267 77.2
PGSC0003DMG400005122 Solanum tuberosum HOM05D007794 ORTHO05D009810 2.4e-117 426.0 269 76.6
Solyc01g106520.1 Solanum lycopersicum HOM05D007794 ORTHO05D009810 1.6e-113 413.3 265 75.1
CAN.G504.32 Capsicum annuum HOM05D007794 ORTHO05D009810 7.9e-113 411.0 270 73.3
Nitab4.5_0002750g0070 Nicotiana tabacum HOM05D007794 ORTHO05D009810 3.5e-108 395.6 268 72.0
Peaxi162Scf00016g03335 Petunia axillaris HOM05D007794 ORTHO05D009810 2.6e-103 379.4 266 68.0
Sopen01g048880 Solanum pennellii HOM05D007794 ORTHO05D009810 7.2e-90 334.7 265 65.3
CAN.G504.34 Capsicum annuum HOM05D007794 ORTHO05D009810 5.7e-87 325.1 268 59.3
Sopen01g048870 Solanum pennellii HOM05D007794 ORTHO05D009810 8.9e-72 274.6 270 52.2
Solyc01g106510.2 Solanum lycopersicum HOM05D007794 ORTHO05D009810 5.8e-71 271.9 270 51.9
Nitab4.5_0001477g0100 Nicotiana tabacum HOM05D007794 ORTHO05D009810 4.1e-69 265.8 275 50.5
Nitab4.5_0005908g0010 Nicotiana tabacum HOM05D007794 ORTHO05D009810 1.6e-68 263.8 271 49.4
CAN.G504.74 Capsicum annuum HOM05D007794 ORTHO05D009810 4.4e-63 245.7 194 64.4
Nitab4.5_0005609g0010 Nicotiana tabacum HOM05D007794 ORTHO05D009810 2.1e-60 236.9 251 51.0
Peaxi162Scf00152g00085 Petunia axillaris HOM05D007794 ORTHO05D009810 2.3e-59 233.4 259 47.5
PGSC0003DMG400035168 Solanum tuberosum HOM05D007794 ORTHO05D009810 1.9e-58 230.3 257 49.4
Rhsim05G0099600 Rhododendron simsii HOM05D007794 ORTHO05D009810 1.3e-51 207.6 199 50.3
vmacro00480 Vaccinium macrocarpon HOM05D007794 ORTHO05D009810 1.7e-51 207.2 198 50.0
vmacro19603 Vaccinium macrocarpon HOM05D007794 ORTHO05D009810 5.1e-51 205.7 199 50.8
Rhsim05G0099400 Rhododendron simsii HOM05D007794 ORTHO05D009810 3.3e-50 203.0 199 49.2
Rhsim05G0099000 Rhododendron simsii HOM05D007794 ORTHO05D009810 2.1e-49 200.3 180 50.0
QL09p046398 Quercus lobata HOM05D007794 ORTHO05D009810 1.1e-48 198.0 200 53.0
Rhsim05G0098900 Rhododendron simsii HOM05D007794 ORTHO05D009810 1.2e-47 194.5 179 50.8
Hma1.2p1_0908F.1_g235600 Hydrangea macrophylla HOM05D007794 ORTHO05D009810 3.8e-46 189.5 207 44.9
Oeu059895.1 Olea europaea HOM05D007794 ORTHO05D009810 8.4e-46 188.3 254 42.9
Hma1.2p1_0908F.1_g235590 Hydrangea macrophylla HOM05D007794 ORTHO05D009810 1.9e-45 187.2 206 44.2
Thecc.02G126700 Theobroma cacao HOM05D007794 ORTHO05D009810 2.7e-44 183.3 268 41.0
Actinidia28021 Actinidia chinensis HOM05D007794 ORTHO05D009810 4.6e-44 182.6 169 52.1
Manes.10G095300 Manihot esculenta HOM05D007794 ORTHO05D009810 1.0e-43 181.4 241 41.5
Prupe.8G073600 Prunus persica HOM05D007794 ORTHO05D009810 7.3e-42 175.3 189 49.2
Manes.10G095400 Manihot esculenta HOM05D007794 ORTHO05D009810 1.6e-41 174.1 253 40.3
Sabra09G0060800 Salix brachista HOM05D007794 ORTHO05D009810 1.1e-40 171.4 188 45.2
Nitab4.5_0000935g0170 Nicotiana tabacum HOM05D007794 ORTHO05D009810 1.4e-40 171.0 272 40.1
Potri.009G078900 Populus trichocarpa HOM05D007794 ORTHO05D009810 3.1e-40 169.9 189 46.6
Nn3g21331 Nelumbo nucifera HOM05D007794 ORTHO05D009810 4.0e-40 169.5 202 48.0
Nitab4.5_0002750g0020 Nicotiana tabacum HOM05D007794 ORTHO05D009810 5.8e-39 165.6 259 40.5
Manes.10G095500 Manihot esculenta HOM05D007794 ORTHO05D009810 6.4e-38 162.2 189 43.4
Sopen01g048890 Solanum pennellii HOM05D007794 ORTHO05D009810 1.4e-37 161.0 182 47.3
Ciclev10030159m.g Citrus clementina HOM05D007794 ORTHO05D009810 4.6e-36 156.0 191 46.1
Migut.K01245 Erythranthe guttata HOM05D007794 ORTHO05D009810 6.0e-36 155.6 183 42.1
VMungo0251G0278 Vigna mungo HOM05D007794 ORTHO05D009810 1.0e-35 154.8 164 47.0
Migut.N01109 Erythranthe guttata HOM05D007794 ORTHO05D009810 5.1e-35 152.5 183 41.5
TPR.G17365 Trifolium pratense HOM05D007794 ORTHO05D009810 3.3e-34 149.8 217 42.4
Glyma.08G066300 Glycine max HOM05D007794 ORTHO05D009810 3.6e-33 146.4 174 42.0
Migut.N01108 Erythranthe guttata HOM05D007794 ORTHO05D009810 6.2e-33 145.6 155 47.1
Oeu059893.1 Olea europaea HOM05D007794 ORTHO05D009810 6.2e-33 145.6 240 38.8
Migut.C00196 Erythranthe guttata HOM05D007794 ORTHO05D009810 3.1e-32 143.3 157 43.9
Migut.C00190 Erythranthe guttata HOM05D007794 ORTHO05D009810 1.1e-29 134.8 156 44.2
Migut.C00194 Erythranthe guttata HOM05D007794 ORTHO05D009810 4.2e-29 132.9 157 41.4
Migut.C00209 Erythranthe guttata HOM05D007794 ORTHO05D009810 3.5e-28 129.8 158 38.6
Ciclev10030146m.g Citrus clementina HOM05D007794 ORTHO05D009810 7.9e-28 128.6 185 40.0
SGA_v2.0_scaffold207G41944 Striga asiatica HOM05D007794 ORTHO05D009810 1.8e-27 127.5 207 37.7
SGA_v2.0_scaffold207G41950 Striga asiatica HOM05D007794 ORTHO05D009810 3.0e-27 126.7 163 42.9
Migut.C00191 Erythranthe guttata HOM05D007794 ORTHO05D009810 3.9e-27 126.3 156 41.0
Migut.C00193 Erythranthe guttata HOM05D007794 ORTHO05D009810 8.7e-27 125.2 156 42.3
Ciclev10030054m.g Citrus clementina HOM05D007794 ORTHO05D009810 2.8e-25 120.2 157 40.8
Solyc01g106530.1 Solanum lycopersicum HOM05D007794 ORTHO05D009810 5.8e-23 112.5 120 45.8
Nn3g19115 Nelumbo nucifera HOM05D007794 ORTHO05D009810 1.0e-22 111.7 195 41.0
SGA_v2.0_scaffold207G41947 Striga asiatica HOM05D007794 ORTHO05D009810 1.7e-22 110.9 152 42.1
Migut.C00192 Erythranthe guttata HOM05D007794 ORTHO05D009810 1.9e-21 107.5 201 32.8
Peaxi162Scf00152g00088 Petunia axillaris HOM05D007794 ORTHO05D009810 4.2e-21 106.3 97 51.5
SGA_v2.0_scaffold98G29290 Striga asiatica HOM05D007794 ORTHO05D009810 5.5e-21 105.9 153 42.5
PGSC0003DMG400005121 Solanum tuberosum HOM05D007794 ORTHO05D009810 4.6e-20 102.8 80 53.8
COL.COLO4_32419 Corchorus olitorius HOM05D007794 ORTHO05D009810 1.0e-19 101.7 126 46.0
Migut.C00208 Erythranthe guttata HOM05D007794 ORTHO05D009810 3.9e-19 99.8 128 37.5
SGA_v2.0_scaffold207G41942 Striga asiatica HOM05D007794 ORTHO05D009810 3.9e-19 99.8 201 31.8
SGA_v2.0_scaffold98G29291 Striga asiatica HOM05D007794 ORTHO05D009810 1.6e-17 94.4 152 37.5
Nn3g21338 Nelumbo nucifera HOM05D007794 ORTHO05D009810 4.8e-17 92.8 162 36.4
Rhsim02G0140200 Rhododendron simsii HOM05D007794 ORTHO05D009810 8.2e-17 92.0 95 53.7
Migut.N01107 Erythranthe guttata HOM05D007794 ORTHO05D009810 1.1e-16 91.7 126 43.7
Migut.O00773 Erythranthe guttata HOM05D007794 ORTHO05D009810 1.4e-16 91.3 123 34.1
TPR.G32148 Trifolium pratense HOM05D001479 ORTHO05D009810 6.9e-16 89.0 134 40.3
Cfa004824 Carpinus fangiana HOM05D007794 ORTHO05D009810 1.9e-13 80.9 163 36.8
Aqoxy6G00559 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 3.2e-13 80.1 176 27.8
Dinv12036 Davidia involucrata HOM05D000151 ORTHO05D000074 1.8e-11 74.3 188 28.7
Ciclev10009143m.g Citrus clementina HOM05D000151 ORTHO05D000074 3.9e-11 73.2 252 23.8
TAR636G2415 Trochodendron aralioides HOM05D001286 ORTHO05D000440 8.7e-11 72.0 181 29.8
arahy.Tifrunner.gnm1.ann1.PYC0TU Arachis hypogaea HOM05D000151 ORTHO05D000074 1.9e-10 70.9 177 32.2
Aqoxy2G00614 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.5e-10 70.5 132 34.1
Dinv12023 Davidia involucrata HOM05D000151 ORTHO05D000074 2.5e-10 70.5 142 31.7
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 5.7e-10 69.3 182 28.6
MD05G1357800 Malus domestica HOM05D000151 ORTHO05D000074 1.3e-09 68.2 189 28.0
Dinv38940 Davidia involucrata HOM05D000151 ORTHO05D000074 2.2e-09 67.4 189 25.9
Medtr3g114990 Medicago truncatula HOM05D000151 ORTHO05D000074 3.7e-09 66.6 188 27.1
Dinv38964 Davidia involucrata HOM05D000151 ORTHO05D000074 4.8e-09 66.2 187 26.7
MD05G1357500 Malus domestica HOM05D000151 ORTHO05D000074 8.2e-09 65.5 128 32.0
RcHm_v2.0_Chr6g0291691 Rosa chinensis HOM05D000151 ORTHO05D000074 1.1e-08 65.1 176 26.1
MBI19_g14409_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 1.4e-08 64.7 116 33.6
Glyma.04G019900 Glycine max HOM05D000151 ORTHO05D000074 1.8e-08 64.3 197 28.4
Rhsim06G0217100 Rhododendron simsii HOM05D007354 ORTHO05D006294 1.8e-08 64.3 201 29.9
MBI19_g10186_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 2.4e-08 63.9 211 28.4
Actinidia01831 Actinidia chinensis HOM05D000151 ORTHO05D000074 3.1e-08 63.5 161 26.7
Dinv07015 Davidia involucrata HOM05D000151 ORTHO05D000074 3.1e-08 63.5 139 30.2
Dinv38983 Davidia involucrata HOM05D000151 ORTHO05D000074 3.1e-08 63.5 193 24.4
Dinv37496 Davidia involucrata HOM05D000151 ORTHO05D000074 4.1e-08 63.2 179 25.7
RcHm_v2.0_Chr1g0376381 Rosa chinensis HOM05D000151 ORTHO05D000074 4.1e-08 63.2 185 28.6
Ca_03646_v3 Cicer arietinum L. HOM05D000151 ORTHO05D000074 5.3e-08 62.8 259 25.5
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 5.3e-08 62.8 147 25.9
MBI19_g47417_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 5.3e-08 62.8 116 33.6
RcHm_v2.0_Chr6g0291671 Rosa chinensis HOM05D000151 ORTHO05D000074 5.3e-08 62.8 174 26.4
Sed0022040 Sechium edule HOM05D008995 ORTHO05D000074 5.3e-08 62.8 91 37.4
Aqoxy4G00447 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 6.9e-08 62.4 127 31.5
Rhsim02G0229700 Rhododendron simsii HOM05D000151 ORTHO05D000074 6.9e-08 62.4 198 26.3
CiPaw.08G070000 Carya illinoinensis HOM05D000151 ORTHO05D000074 9.0e-08 62.0 183 30.1
ECA246G4358 Erigeron canadensis HOM05D000151 ORTHO05D000074 9.0e-08 62.0 98 36.7
Rhsim05G0099100 Rhododendron simsii HOM05D007794 ORTHO05D009810 9.0e-08 62.0 63 46.0
Rhsim06G0217000 Rhododendron simsii HOM05D003035 ORTHO05D000440 9.0e-08 62.0 201 30.3
MSTRG.19960 Avicennia marina HOM05D000151 ORTHO05D000074 1.2e-07 61.6 186 26.3
TAR636G3348 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.2e-07 61.6 196 25.5
Lj2C484T9 Lonicera japonica HOM05D000151 ORTHO05D000074 1.5e-07 61.2 147 29.9
Rhsim05G0099500 Rhododendron simsii HOM05D007794 ORTHO05D009810 1.5e-07 61.2 60 53.3
TAR371G0808 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.5e-07 61.2 181 28.7
RcHm_v2.0_Chr4g0434481 Rosa chinensis HOM05D008995 ORTHO05D000074 2.0e-07 60.8 150 26.7
Lj2P459T34 Lonicera japonica HOM05D000151 ORTHO05D000074 2.6e-07 60.5 127 29.1
Atru.chr9.2200 Acer truncatum HOM05D000151 ORTHO05D000074 3.4e-07 60.1 198 26.3
Dinv00092 Davidia involucrata HOM05D000151 ORTHO05D000074 3.4e-07 60.1 141 29.8
HanXRQChr15g0477851 Helianthus annuus HOM05D000151 ORTHO05D000074 3.4e-07 60.1 84 38.1
MBI19_g31306_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 3.4e-07 60.1 112 33.9
QL08p002650 Quercus lobata HOM05D003035 ORTHO05D000440 3.4e-07 60.1 178 28.7
VMungo1080G0331 Vigna mungo HOM05D008995 ORTHO05D000074 3.4e-07 60.1 126 33.3
Lalb_Chr23g0265911 Lupinus albus HOM05D000151 ORTHO05D000074 4.5e-07 59.7 229 26.2
Os12g0585300 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 4.5e-07 59.7 192 27.6
Aqoxy4G03031 Aquilegia oxysepala HOM05D003035 ORTHO05D000440 5.9e-07 59.3 230 27.0
VMungo0251G1278 Vigna mungo HOM05D000151 ORTHO05D000074 5.9e-07 59.3 237 23.2
Ca_15450_v3 Cicer arietinum L. HOM05D000151 ORTHO05D000074 7.7e-07 58.9 144 31.2
MBI19_g41824_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 7.7e-07 58.9 128 32.8
QL11p053223 Quercus lobata HOM05D000151 ORTHO05D000074 7.7e-07 58.9 132 31.8
Aqoxy4G02957 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.0e-06 58.5 132 28.8
Aqoxy7G03456 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.0e-06 58.5 246 27.2
arahy.Tifrunner.gnm1.ann1.29PSUQ Arachis hypogaea HOM05D000151 ORTHO05D000074 1.0e-06 58.5 217 24.4
CSS0014442 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 1.0e-06 58.5 151 28.5
AUR62024928 Chenopodium quinoa HOM05D000151 ORTHO05D000074 1.0e-06 58.5 151 25.8
QL11p052376 Quercus lobata HOM05D000151 ORTHO05D000074 1.0e-06 58.5 132 31.1
QL11p053242 Quercus lobata HOM05D000151 ORTHO05D000074 1.0e-06 58.5 132 31.1
TPR.G38135 Trifolium pratense HOM05D000151 ORTHO05D000074 1.0e-06 58.5 137 31.4
TAR369G0060 Trochodendron aralioides HOM05D001286 ORTHO05D000440 1.0e-06 58.5 116 31.0
Ciclev10017461m.g Citrus clementina HOM05D000151 ORTHO05D000074 1.3e-06 58.2 185 27.0
Potri.009G140000 Populus trichocarpa HOM05D000151 ORTHO05D000074 1.3e-06 58.2 177 26.6
TPR.G18028 Trifolium pratense HOM05D003035 ORTHO05D000440 1.3e-06 58.2 150 31.3
DCAR_022831 Daucus carota HOM05D000151 ORTHO05D000074 1.7e-06 57.8 213 24.9
Lj2P496T12 Lonicera japonica HOM05D000151 ORTHO05D000074 1.7e-06 57.8 145 30.3
Lj5P174T68 Lonicera japonica HOM05D000151 ORTHO05D000074 1.7e-06 57.8 176 27.8
Nitab4.5_0015521g0010 Nicotiana tabacum HOM05D000151 ORTHO05D000074 1.7e-06 57.8 171 25.7
COL.COLO4_12986 Corchorus olitorius HOM05D000151 ORTHO05D000074 2.2e-06 57.4 172 27.3
Dinv38984 Davidia involucrata HOM05D000151 ORTHO05D000074 2.9e-06 57.0 133 25.6
MBI19_g39963_MAGBIO Magnolia biondii HOM05D007354 ORTHO05D006294 2.9e-06 57.0 79 39.2
Phvul.003G267700 Phaseolus vulgaris HOM05D000151 ORTHO05D000074 2.9e-06 57.0 240 24.6
TAR383G0168 Trochodendron aralioides HOM05D001286 ORTHO05D000440 2.9e-06 57.0 127 29.1
Dinv12037 Davidia involucrata HOM05D000151 ORTHO05D000074 3.8e-06 56.6 85 35.3
FAN24G1140 Fragaria x ananassa HOM05D000151 ORTHO05D000074 3.8e-06 56.6 191 27.2
Lj4g0020628 Lotus japonicus HOM05D000151 ORTHO05D000074 3.8e-06 56.6 210 26.2
QL11p052366 Quercus lobata HOM05D000151 ORTHO05D000074 3.8e-06 56.6 132 31.8
FAN20G0623 Fragaria x ananassa HOM05D000151 ORTHO05D000074 5.0e-06 56.2 191 27.2
Lj2P474T30 Lonicera japonica HOM05D000151 ORTHO05D000074 5.0e-06 56.2 174 23.0
Manes.18G008400 Manihot esculenta HOM05D000151 ORTHO05D000074 5.0e-06 56.2 187 27.3
PGR142G2333 Punica granatum HOM05D000151 ORTHO05D000074 5.0e-06 56.2 88 33.0
MSTRG.6367 Avicennia marina HOM05D000151 ORTHO05D000074 6.5e-06 55.8 132 28.8
CAN.G311.85 Capsicum annuum HOM05D000151 ORTHO05D000074 6.5e-06 55.8 185 27.6
AUR62024918 Chenopodium quinoa HOM05D000587 ORTHO05D001561 6.5e-06 55.8 102 31.4
COL.COLO4_12985 Corchorus olitorius HOM05D000151 ORTHO05D000074 6.5e-06 55.8 154 28.6
Lj2P493T22 Lonicera japonica HOM05D000151 ORTHO05D000074 6.5e-06 55.8 145 29.0
Peaxi162Scf00300g00043 Petunia axillaris HOM05D000151 ORTHO05D000074 6.5e-06 55.8 140 27.9
QL02p017356 Quercus lobata HOM05D000151 ORTHO05D000074 6.5e-06 55.8 165 28.5
Ciclev10024484m.g Citrus clementina HOM05D000151 ORTHO05D000074 8.5e-06 55.5 179 24.6


User provided reference genes

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