Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 7.2e-104 380.6 190 100.0
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 7.2e-104 380.6 190 100.0
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.7e-103 378.6 190 99.5
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.4e-99 366.3 190 95.3
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.5e-96 354.4 187 93.6
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.5e-80 303.1 187 78.6
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.6e-79 299.7 190 75.3
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.8e-78 296.2 189 75.1
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 5.2e-78 294.7 188 75.0
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 6.8e-78 294.3 190 77.4
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 6.8e-78 294.3 190 79.5
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.0e-77 292.7 185 75.1
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 9.8e-77 290.4 172 82.0
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.7e-76 289.7 173 78.6
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.7e-76 289.7 187 74.3
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.9e-76 288.9 188 73.4
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.4e-75 286.6 186 74.7
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.4e-75 286.6 164 84.1
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.4e-75 286.6 187 73.8
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 1.9e-75 286.2 184 75.0
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.4e-75 285.8 186 73.1
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.4e-75 285.8 187 75.9
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.1e-75 285.0 186 73.7
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.1e-75 285.0 186 73.7
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 5.4e-75 284.6 188 73.4
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 7.1e-75 284.3 185 71.9
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.2e-74 283.5 190 71.1
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.6e-74 283.1 187 75.9
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 2.7e-74 282.3 173 79.8
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 3.5e-74 282.0 188 72.9
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 3.5e-74 282.0 188 71.3
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 4.6e-74 281.6 188 71.3
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 4.6e-74 281.6 187 72.2
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.0e-74 281.2 151 91.4
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 7.8e-74 280.8 185 73.0
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.0e-73 280.4 188 71.3
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.3e-73 280.0 178 71.9
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.7e-73 279.6 191 70.2
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.7e-73 279.6 176 75.0
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.7e-73 279.6 173 78.0
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.3e-73 279.3 175 77.7
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 3.0e-73 278.9 185 72.4
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.0e-73 278.9 187 69.5
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 3.9e-73 278.5 175 74.3
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.9e-73 278.5 175 74.3
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.9e-73 278.5 175 76.0
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 5.1e-73 278.1 188 70.2
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.1e-73 278.1 189 69.8
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 5.1e-73 278.1 185 72.4
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 6.6e-73 277.7 188 70.2
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 8.6e-73 277.3 173 76.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 8.6e-73 277.3 184 70.1
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.1e-72 276.9 188 70.7
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.1e-72 276.9 188 70.2
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.1e-72 276.9 173 73.4
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.5e-72 276.6 188 69.7
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.5e-72 276.6 173 76.9
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.9e-72 276.2 175 73.7
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 2.5e-72 275.8 175 76.0
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.5e-72 275.8 187 71.1
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.3e-72 275.4 173 76.9
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.3e-72 275.4 173 76.9
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 5.6e-72 274.6 174 75.9
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 5.6e-72 274.6 190 69.5
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 8.1e-71 270.8 175 72.6
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 8.1e-71 270.8 185 68.6
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.1e-70 270.4 187 73.8
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-70 270.0 188 71.3
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.4e-70 270.0 185 68.6
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.4e-70 270.0 173 74.6
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.3e-70 269.2 185 68.1
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 3.1e-70 268.9 159 82.4
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.1e-70 268.9 173 74.0
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 4.0e-70 268.5 173 75.1
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 5.2e-70 268.1 188 70.2
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 6.8e-70 267.7 182 70.3
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.5e-69 266.5 187 69.0
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.7e-68 263.1 158 82.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 2.9e-68 262.3 183 69.9
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 3.7e-68 261.9 186 67.7
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 6.4e-68 261.2 175 72.0
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 6.4e-68 261.2 165 73.9
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.1e-67 260.4 173 70.5
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.4e-67 260.0 160 78.1
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 5.4e-67 258.1 173 69.9
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 7.1e-67 257.7 182 68.7
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 9.2e-67 257.3 185 65.9
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 3.5e-66 255.4 190 66.8
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 7.8e-66 254.2 184 68.5
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 2.3e-65 252.7 182 67.6
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 3.0e-65 252.3 172 72.1
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 3.0e-65 252.3 182 67.6
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 3.9e-65 251.9 174 69.0
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 5.1e-65 251.5 169 69.2
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 5.1e-65 251.5 164 72.6
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 5.1e-65 251.5 164 73.2
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 7.3e-64 247.7 171 70.2
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.6e-63 246.5 169 69.8
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.6e-63 246.5 170 67.6
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.8e-63 245.7 184 66.8
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 4.7e-63 245.0 170 70.6
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 6.2e-63 244.6 186 64.5
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 6.2e-63 244.6 164 72.0
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.1e-62 243.8 164 71.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.4e-62 243.4 163 71.8
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 3.1e-62 242.3 173 67.1
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 6.8e-62 241.1 164 70.1
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 8.9e-62 240.7 164 71.3
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 8.9e-62 240.7 164 70.1
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 2.0e-61 239.6 164 69.5
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 2.0e-61 239.6 164 69.5
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.6e-61 239.2 170 67.1
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 2.6e-61 239.2 160 75.0
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 2.6e-61 239.2 168 67.3
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 2.6e-61 239.2 173 66.5
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.6e-61 239.2 168 68.5
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.2e-60 236.1 170 68.2
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 2.2e-60 236.1 163 70.6
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 4.9e-60 235.0 168 64.3
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 4.9e-60 235.0 173 64.7
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 6.4e-60 234.6 165 66.7
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.1e-59 233.8 134 80.6
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.4e-59 233.4 173 64.2
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.4e-59 233.4 167 67.1
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 4.2e-59 231.9 169 66.3
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 4.2e-59 231.9 163 68.7
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 7.1e-59 231.1 169 65.7
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 9.3e-59 230.7 160 67.5
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.6e-58 229.9 173 64.2
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.0e-58 228.0 176 62.5
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.3e-57 226.9 168 67.3
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 3.9e-57 225.3 169 65.1
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 6.6e-57 224.6 164 65.9
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.5e-56 223.4 165 67.9
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-56 223.4 165 67.9
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.3e-56 221.9 168 66.1
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 5.6e-56 221.5 160 64.4
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 5.6e-56 221.5 134 76.1
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.4e-54 216.9 159 62.3
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.0e-54 215.3 180 57.8
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-53 213.4 182 61.5
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.3e-52 210.3 165 61.2
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.2e-52 209.5 164 60.4
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.9e-52 208.4 155 63.2
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.1e-51 207.2 190 59.5
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.1e-51 204.5 161 60.9
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.6e-50 203.4 165 65.5
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.1e-50 203.0 155 65.2
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 7.3e-48 194.5 178 54.5
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.6e-47 193.4 158 61.4
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 6.2e-47 191.4 160 64.4
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.1e-46 189.1 124 75.0
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.6e-45 186.0 137 68.6
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.8e-45 184.9 164 57.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.9e-44 182.6 128 69.5
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 3.8e-44 182.2 180 53.3
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 6.4e-44 181.4 169 56.2
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 7.1e-43 177.9 141 57.4
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.6e-42 176.8 131 65.6
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.6e-40 168.3 169 52.7
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-39 167.2 169 52.7
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 6.2e-39 164.9 129 62.0
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.9e-32 143.3 116 62.9
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.7e-32 141.7 99 69.7
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 7.4e-32 141.4 94 69.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 6.3e-31 138.3 91 67.0
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 8.2e-31 137.9 89 71.9
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.8e-30 136.7 93 71.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.5e-29 133.7 150 43.3
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.0e-25 120.9 175 41.7
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 6.3e-23 111.7 73 69.9
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.7e-18 96.3 84 56.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.3e-16 89.0 66 69.7
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 8.5e-12 74.7 36 91.7
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-11 73.9 51 66.7
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 2.5e-11 73.2 174 31.6
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 4.2e-11 72.4 107 40.2
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.1e-10 70.1 36 83.3
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 3.9e-09 65.9 177 27.7
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 5.7e-08 62.0 187 25.7
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-07 60.5 46 58.7
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 2.4e-06 56.6 80 38.8


User provided reference genes

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