Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 2.3e-224 781.9 403 100.0
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 3.5e-209 731.5 402 94.5
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 4.6e-193 677.9 360 96.4
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 5.1e-192 674.5 376 91.5
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 1.1e-173 613.6 401 82.8
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 2.0e-172 609.4 368 86.4
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 1.2e-159 567.0 401 78.8
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 1.5e-135 486.9 400 67.2
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 7.5e-135 484.6 397 68.3
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 1.0e-131 474.2 329 74.8
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 5.1e-131 471.9 315 78.1
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 6.6e-131 471.5 315 77.8
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 4.3e-130 468.8 314 78.0
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 8.9e-128 461.1 343 71.4
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 1.5e-127 460.3 323 75.5
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 2.2e-126 456.4 300 80.0
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 2.2e-126 456.4 312 76.9
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 2.9e-126 456.1 316 75.3
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 3.8e-126 455.7 394 63.5
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 6.4e-126 454.9 322 75.5
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 6.4e-126 454.9 341 71.3
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 1.6e-124 450.3 307 75.9
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 2.7e-124 449.5 333 72.4
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 1.3e-123 447.2 310 74.2
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 1.7e-123 446.8 326 69.9
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 2.3e-123 446.4 317 73.5
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 3.9e-123 445.7 312 73.7
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 3.9e-123 445.7 378 66.4
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 8.6e-123 444.5 311 74.6
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 1.5e-122 443.7 317 72.2
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 4.3e-122 442.2 312 73.4
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 4.3e-122 442.2 312 73.4
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 4.3e-122 442.2 314 73.9
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 9.6e-122 441.0 316 71.8
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 4.7e-121 438.7 334 68.0
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 4.7e-121 438.7 321 70.7
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 4.7e-121 438.7 342 67.8
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 8.1e-121 438.0 310 72.6
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 8.1e-121 438.0 391 61.6
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 1.4e-120 437.2 357 65.3
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 1.8e-120 436.8 344 68.6
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 3.1e-120 436.0 321 71.3
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 4.0e-120 435.6 321 71.0
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 6.9e-120 434.9 318 71.1
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 8.9e-120 434.5 339 68.7
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 2.0e-119 433.3 315 69.5
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 3.4e-119 432.6 326 70.9
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 3.4e-119 432.6 330 70.6
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 4.4e-119 432.2 376 62.0
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 7.6e-119 431.4 305 73.4
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 9.9e-119 431.0 339 69.0
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 9.9e-119 431.0 316 71.5
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 2.2e-118 429.9 308 72.1
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 3.8e-118 429.1 337 68.2
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 3.8e-118 429.1 316 71.5
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 8.4e-118 427.9 340 68.2
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 1.1e-117 427.6 315 70.5
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 1.4e-117 427.2 303 72.3
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 3.2e-117 426.0 315 70.5
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 7.1e-117 424.9 344 66.6
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 1.2e-116 424.1 311 72.0
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 1.6e-116 423.7 326 69.9
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 2.1e-116 423.3 326 68.4
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 2.7e-116 422.9 308 70.5
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 2.7e-116 422.9 321 69.8
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 1.0e-115 421.0 343 66.5
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 1.7e-115 420.2 319 69.0
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 2.5e-114 416.4 316 69.0
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 5.6e-114 415.2 311 70.4
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 1.3e-113 414.1 312 69.9
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 1.6e-113 413.7 322 68.6
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 1.1e-112 411.0 322 68.6
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.8e-112 410.2 323 66.3
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 2.4e-112 409.8 322 68.3
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 2.4e-112 409.8 357 64.4
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 6.9e-112 408.3 305 71.5
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 1.5e-111 407.1 281 75.8
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 9.9e-111 404.4 305 70.5
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 2.2e-110 403.3 371 63.1
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 1.4e-109 400.6 311 70.1
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 3.2e-109 399.4 330 61.8
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 3.9e-107 392.5 321 66.7
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 3.9e-107 392.5 280 72.5
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 1.9e-106 390.2 311 63.7
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 2.5e-106 389.8 358 60.3
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 8.1e-105 384.8 276 73.9
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 1.8e-104 383.6 296 68.9
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 2.4e-104 383.3 308 64.0
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 5.3e-104 382.1 409 54.8
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 1.5e-103 380.6 298 66.4
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 2.9e-102 376.3 321 63.2
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 5.6e-98 362.1 301 63.5
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 2.4e-96 356.7 307 59.6
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 6.9e-96 355.1 314 59.2
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 1.5e-95 354.0 306 62.1
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 1.9e-93 347.1 281 63.3
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 4.2e-93 345.9 256 73.0
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 2.1e-92 343.6 334 56.6
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 1.0e-91 341.3 321 58.9
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 1.3e-83 314.3 229 72.5
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 5.1e-83 312.4 217 75.1
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 6.3e-81 305.4 228 71.5
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 1.0e-75 288.1 198 75.8
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 1.1e-74 284.6 230 68.7
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 4.8e-73 279.3 212 67.0
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 5.0e-70 269.2 278 56.5
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 8.0e-68 261.9 337 46.3
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 1.8e-67 260.8 315 49.2
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 2.6e-66 256.9 311 46.9
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 2.0e-58 230.7 270 47.4
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 1.3e-57 228.0 301 46.5
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 1.9e-53 214.2 175 60.6
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 2.5e-53 213.8 297 44.4
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 2.7e-47 193.7 344 37.5
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 2.6e-42 177.2 129 67.4
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 1.2e-28 131.7 103 64.1
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 1.2e-28 131.7 103 64.1
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 2.1e-28 131.0 98 63.3
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 1.3e-25 121.7 107 61.7
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 1.1e-21 108.6 98 58.2
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 1.1e-21 108.6 98 58.2
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 1.9e-21 107.8 90 58.9
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 9.5e-21 105.5 98 56.1
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 7.5e-18 95.9 95 57.9
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 4.7e-12 76.6 51 70.6
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 6.4e-09 66.2 79 46.8


User provided reference genes

Program Settings