Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 1.4e-73 279.6 156 100.0
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 2.5e-70 268.9 156 96.2
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 2.8e-69 265.4 156 95.5
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 2.4e-68 262.3 156 93.6
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 5.2e-68 261.2 156 92.3
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 4.4e-67 258.1 157 93.0
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 3.2e-65 251.9 152 93.4
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 2.2e-58 229.2 153 83.7
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 1.1e-57 226.9 152 82.9
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 4.2e-57 224.9 151 84.8
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 9.3e-57 223.8 153 79.7
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 1.6e-56 223.0 151 82.1
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 1.6e-56 223.0 150 85.3
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 2.1e-56 222.6 152 82.2
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 2.7e-56 222.2 156 81.4
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 4.6e-56 221.5 150 84.7
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 4.6e-56 221.5 151 83.4
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 4.6e-56 221.5 152 82.2
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 6.0e-56 221.1 152 80.9
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 7.9e-56 220.7 152 82.2
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 7.9e-56 220.7 152 82.9
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 1.3e-55 219.9 152 78.9
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 1.8e-55 219.5 148 80.4
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 1.8e-55 219.5 152 81.6
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 2.3e-55 219.2 152 80.9
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 3.0e-55 218.8 148 81.8
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 3.9e-55 218.4 148 80.4
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 6.7e-55 217.6 151 80.8
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 6.7e-55 217.6 151 80.8
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 6.7e-55 217.6 149 83.2
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 1.1e-54 216.9 150 81.3
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 1.9e-54 216.1 152 80.9
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 4.3e-54 214.9 143 84.6
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 4.3e-54 214.9 148 82.4
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 5.6e-54 214.5 153 79.1
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 5.6e-54 214.5 153 79.1
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 9.6e-54 213.8 148 79.7
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 1.3e-53 213.4 148 79.7
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 1.6e-53 213.0 152 78.3
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.6e-53 213.0 152 78.9
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 2.1e-53 212.6 147 79.6
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 3.7e-53 211.8 147 81.6
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 3.7e-53 211.8 147 81.6
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 3.7e-53 211.8 171 73.7
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 4.8e-53 211.5 146 80.1
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 8.1e-53 210.7 147 81.0
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 8.1e-53 210.7 153 77.1
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 1.8e-52 209.5 139 82.0
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.4e-52 209.1 147 80.3
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.4e-52 209.1 147 80.3
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 2.4e-52 209.1 152 78.3
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 4.0e-52 208.4 148 78.4
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 4.0e-52 208.4 148 77.7
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 4.0e-52 208.4 148 78.4
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 4.0e-52 208.4 148 78.4
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 4.0e-52 208.4 148 79.7
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 4.0e-52 208.4 148 78.4
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 5.3e-52 208.0 148 78.4
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 5.3e-52 208.0 153 76.5
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 6.9e-52 207.6 148 77.7
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 6.9e-52 207.6 153 79.1
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 9.0e-52 207.2 152 77.0
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 1.2e-51 206.8 148 77.7
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 1.5e-51 206.5 146 77.4
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 1.5e-51 206.5 139 82.0
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 2.0e-51 206.1 148 77.0
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 2.0e-51 206.1 153 75.8
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 2.6e-51 205.7 148 77.0
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 2.6e-51 205.7 148 77.0
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 4.5e-51 204.9 148 77.0
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 5.8e-51 204.5 148 77.7
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 1.3e-50 203.4 148 76.4
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 1.7e-50 203.0 131 84.7
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 2.9e-50 202.2 148 75.7
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 3.8e-50 201.8 154 74.7
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 4.9e-50 201.4 154 75.3
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 1.4e-49 199.9 148 75.7
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 1.9e-49 199.5 151 74.8
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 2.4e-49 199.1 142 77.5
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 2.4e-49 199.1 142 77.5
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 2.7e-48 195.7 154 72.7
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 4.6e-48 194.9 138 77.5
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 6.0e-48 194.5 154 72.1
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 7.9e-48 194.1 147 71.4
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 3.0e-47 192.2 154 72.7
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.0e-47 192.2 146 71.9
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 2.8e-45 185.7 150 68.7
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 1.4e-44 183.3 148 72.3
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 1.5e-43 179.9 149 68.5
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 2.9e-42 175.6 153 68.6
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 3.8e-42 175.3 224 52.7
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 4.9e-42 174.9 156 68.6
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 8.4e-42 174.1 153 70.6
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 1.9e-41 172.9 153 68.0
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 5.5e-41 171.4 148 66.9
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 3.5e-40 168.7 151 66.9
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 6.7e-39 164.5 127 76.4
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 1.9e-38 162.9 147 68.7
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 9.7e-38 160.6 111 82.0
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 6.3e-37 157.9 143 64.3
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 6.3e-37 157.9 112 80.4
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 6.9e-36 154.5 153 63.4
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 3.4e-35 152.1 143 57.3
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 1.0e-34 150.6 153 62.7
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 1.3e-34 150.2 148 54.7
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 1.7e-34 149.8 111 78.4
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 3.8e-34 148.7 148 62.2
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 1.9e-33 146.4 116 69.8
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 2.5e-33 146.0 101 79.2
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 9.4e-33 144.1 105 74.3
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 1.6e-32 143.3 171 57.3
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 7.9e-32 141.0 110 73.6
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 1.0e-31 140.6 104 75.0
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 3.9e-31 138.7 155 58.1
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 4.3e-30 135.2 153 57.5
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 6.3e-29 131.3 145 46.9
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 9.1e-28 127.5 153 55.6
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 9.1e-28 127.5 153 55.6
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 4.5e-27 125.2 152 54.6
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.8e-26 122.1 91 75.8
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 3.3e-22 109.0 81 77.8
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 1.3e-21 107.1 126 56.3
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 2.3e-15 86.3 65 72.3
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 2.8e-13 79.3 136 39.7
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 1.0e-10 70.9 54 68.5
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 1.3e-10 70.5 47 74.5
CBR_g70737 Chara braunii HOM05D006161 ORTHO05D007483 1.7e-10 70.1 151 31.8
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 5.0e-10 68.6 127 42.5
VMungo0540G0821 Vigna mungo HOM05D006161 ORTHO05D007483 2.7e-08 62.8 45 71.1
Oeu011770.1 Olea europaea HOM05D004115 ORTHO05D005004 5.2e-07 58.5 42 69.0


User provided reference genes

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