Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g047310 Solanum pennellii HOM05D007736 ORTHO05D009783 6.7e-231 803.9 478 100.0
Solyc01g104790.4 Solanum lycopersicum HOM05D007736 ORTHO05D009783 1.0e-223 780.0 478 96.4
PGSC0003DMG400029771 Solanum tuberosum HOM05D007736 ORTHO05D009783 2.1e-200 702.6 481 89.6
Nitab4.5_0000249g0440 Nicotiana tabacum HOM05D007736 ORTHO05D009783 5.1e-114 415.6 583 56.9
Nitab4.5_0014357g0010 Nicotiana tabacum HOM05D007736 ORTHO05D009783 4.2e-108 396.0 598 54.8
CAN.G523.104 Capsicum annuum HOM05D007736 ORTHO05D009783 4.2e-92 342.8 557 54.8
Cc02_g21990 Coffea canephora HOM05D007736 ORTHO05D009783 1.7e-56 224.6 271 47.2
Dinv19331 Davidia involucrata HOM05D007736 ORTHO05D009783 9.2e-55 218.8 298 43.3
Dinv24237 Davidia involucrata HOM05D007736 ORTHO05D009783 3.6e-51 206.8 260 45.8
Lj5P244T47 Lonicera japonica HOM05D007736 ORTHO05D009783 8.0e-51 205.7 279 43.7
Actinidia38961 Actinidia chinensis HOM05D007736 ORTHO05D009783 5.7e-49 199.5 340 38.5
Rhsim11G0133400 Rhododendron simsii HOM05D007736 ORTHO05D009783 2.2e-48 197.6 272 43.0
HanXRQChr16g0514111 Helianthus annuus HOM05D007736 ORTHO05D009783 2.5e-44 184.1 229 45.9
vmacro01801 Vaccinium macrocarpon HOM05D007736 ORTHO05D009783 5.6e-44 183.0 269 40.9
Peaxi162Scf01290g00019 Petunia axillaris HOM05D007736 ORTHO05D009783 1.2e-43 181.8 471 46.7
Sc16g0009620 Simmondsia chinensis HOM05D007736 ORTHO05D009783 2.8e-43 180.6 281 39.5
MELO3C028798.2 Cucumis melo HOM05D007736 ORTHO05D009783 3.1e-42 177.2 243 42.4
MSTRG.27826 Avicennia marina HOM05D007736 ORTHO05D009783 4.0e-42 176.8 255 39.6
CsaV3_7G022310 Cucumis sativus L. HOM05D007736 ORTHO05D009783 4.0e-42 176.8 243 42.4
Haze_10792 Corylus avellana HOM05D007736 ORTHO05D009783 5.2e-42 176.4 250 42.8
Lsat_1_v5_gn_5_106541 Lactuca sativa HOM05D007736 ORTHO05D009783 6.8e-42 176.0 263 41.4
Cfa021836 Carpinus fangiana HOM05D007736 ORTHO05D009783 8.9e-42 175.6 248 42.7
DCAR_021830 Daucus carota HOM05D007736 ORTHO05D009783 1.2e-41 175.3 241 39.8
CiPaw.05G040000 Carya illinoinensis HOM05D007736 ORTHO05D009783 1.5e-41 174.9 241 43.6
Eucgr.I02697 Eucalyptus grandis HOM05D007736 ORTHO05D009783 2.0e-41 174.5 260 41.9
ClCG09G014560 Citrullus lanatus HOM05D007736 ORTHO05D009783 2.6e-41 174.1 243 41.6
Sed0013332 Sechium edule HOM05D007736 ORTHO05D009783 1.1e-39 168.7 236 41.5
Thecc.02G144400 Theobroma cacao HOM05D007736 ORTHO05D009783 7.8e-38 162.5 240 40.4
COL.COLO4_20877 Corchorus olitorius HOM05D007736 ORTHO05D009783 1.3e-37 161.8 240 42.1
Potri.015G008200 Populus trichocarpa HOM05D007736 ORTHO05D009783 3.9e-37 160.2 237 42.2
QL11p018598 Quercus lobata HOM05D007736 ORTHO05D009783 5.0e-37 159.8 249 35.7
Sed0025125 Sechium edule HOM05D007736 ORTHO05D009783 1.9e-36 157.9 239 40.2
TAR625G1059 Trochodendron aralioides HOM05D007736 ORTHO05D009783 2.5e-36 157.5 263 39.5
Migut.N01016 Erythranthe guttata HOM05D007736 ORTHO05D009783 3.3e-36 157.1 232 39.7
Potri.012G020400 Populus trichocarpa HOM05D007736 ORTHO05D009783 3.3e-36 157.1 234 40.6
PGR142G3153 Punica granatum HOM05D007736 ORTHO05D009783 4.7e-35 153.3 236 39.8
TWI14G1332 Tripterygium wilfordii HOM05D007736 ORTHO05D009783 8.1e-35 152.5 256 39.1
unitig_26.g9583 Utricularia gibba HOM05D007736 ORTHO05D009783 2.3e-34 151.0 116 55.2
EL10Ac4g09677 Beta vulgaris HOM05D007736 ORTHO05D009783 5.2e-34 149.8 262 37.0
ECA234G2384 Erigeron canadensis HOM05D007736 ORTHO05D009783 6.8e-34 149.4 269 36.1
Hund21796 Selenicereus undatus HOM05D007736 ORTHO05D009783 6.8e-34 149.4 277 36.5
Manes.04G057900 Manihot esculenta HOM05D007736 ORTHO05D009783 2.0e-33 147.9 234 38.5
Ca_00110_v3 Cicer arietinum L. HOM05D007736 ORTHO05D009783 2.6e-33 147.5 259 37.1
Sabra12G0012700 Salix brachista HOM05D007736 ORTHO05D009783 3.4e-33 147.1 230 38.3
Sabra15G0006300 Salix brachista HOM05D007736 ORTHO05D009783 3.4e-33 147.1 239 38.1
Psat1g218640 Pisum sativum HOM05D007736 ORTHO05D009783 7.5e-33 146.0 255 35.3
MSTRG.5252 Avicennia marina HOM05D007736 ORTHO05D009783 2.2e-32 144.4 288 34.4
Phvul.006G209200 Phaseolus vulgaris HOM05D007736 ORTHO05D009783 2.9e-32 144.1 250 34.0
Glyma.15G050700 Glycine max HOM05D007736 ORTHO05D009783 8.3e-32 142.5 251 34.7
Actinidia00233 Actinidia chinensis HOM05D007736 ORTHO05D009783 1.4e-31 141.7 202 40.6
Ah.06g188730 Amaranthus hybridus HOM05D007736 ORTHO05D009783 1.9e-31 141.4 250 38.4
Cpa.g.sc2.48 Carica papaya HOM05D007736 ORTHO05D009783 3.5e-30 137.1 240 36.7
Ciclev10028677m.g Citrus clementina HOM05D007736 ORTHO05D009783 3.5e-30 137.1 241 39.4
Medtr2g008130 Medicago truncatula HOM05D007736 ORTHO05D009783 6.0e-30 136.3 246 35.4
VMungo0540G1970 Vigna mungo HOM05D007736 ORTHO05D009783 6.0e-30 136.3 253 34.4
arahy.Tifrunner.gnm1.ann1.40XV2D Arachis hypogaea HOM05D007736 ORTHO05D009783 2.3e-29 134.4 256 34.4
arahy.Tifrunner.gnm1.ann1.JZ71MD Arachis hypogaea HOM05D007736 ORTHO05D009783 3.9e-29 133.7 281 33.5
AUR62006887 Chenopodium quinoa HOM05D007736 ORTHO05D009783 3.3e-28 130.6 291 36.1
AUR62000538 Chenopodium quinoa HOM05D007736 ORTHO05D009783 3.6e-27 127.1 260 36.2
Glyma.08G181600 Glycine max HOM05D007736 ORTHO05D009783 5.2e-26 123.2 250 32.8
HanXRQChr10g0289121 Helianthus annuus HOM05D007736 ORTHO05D009783 5.2e-26 123.2 230 36.5
Atru.chr6.1122 Acer truncatum HOM05D007736 ORTHO05D009783 4.4e-25 120.2 204 38.2
Lj6g0003665 Lotus japonicus HOM05D007736 ORTHO05D009783 2.9e-24 117.5 252 31.0
FvH4_6g01062 Fragaria vesca HOM05D000868 ORTHO05D000711 1.1e-23 115.5 113 47.8
FAN14G5928 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.1e-23 115.5 113 47.8
FAN05G0537 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.4e-23 115.2 113 47.8
SGA_v2.0_scaffold45G17286 Striga asiatica HOM05D007736 ORTHO05D009783 3.2e-23 114.0 220 37.3
Aqoxy4G00650 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 7.1e-23 112.8 290 31.0
FAN02G1431 Fragaria x ananassa HOM05D007736 ORTHO05D009783 7.1e-23 112.8 113 46.9
Nn1g06123 Nelumbo nucifera HOM05D007736 ORTHO05D009783 7.1e-23 112.8 221 31.7
FAN05G0165 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.6e-22 111.7 113 46.9
TPR.G19753 Trifolium pratense HOM05D007736 ORTHO05D009783 1.6e-22 111.7 245 33.1
Aqoxy5G02135 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 2.1e-22 111.3 290 30.7
RcHm_v2.0_Chr3g0448601 Rosa chinensis HOM05D007736 ORTHO05D009783 4.6e-22 110.2 170 37.1
FAN09G0667 Fragaria x ananassa HOM05D007736 ORTHO05D009783 3.9e-21 107.1 109 47.7
CDE02G1981 Ceratophyllum demersum HOM05D007736 ORTHO05D009783 6.6e-21 106.3 262 28.2
Prupe.7G056800 Prunus persica HOM05D007736 ORTHO05D009783 7.3e-20 102.8 115 43.5
MD04G1236600 Malus domestica HOM05D007736 ORTHO05D009783 6.2e-19 99.8 115 43.5
ATR0772G143 Amborella trichopoda HOM05D007736 ORTHO05D009783 1.8e-18 98.2 347 27.4
Prupe.6G356600 Prunus persica HOM05D007736 ORTHO05D009783 3.1e-18 97.4 114 41.2
MD12G1255900 Malus domestica HOM05D007736 ORTHO05D009783 5.8e-17 93.2 115 41.7
Lalb_Chr20g0123201 Lupinus albus HOM05D007736 ORTHO05D009783 2.2e-16 91.3 265 26.8
TAR381G1413 Trochodendron aralioides HOM05D007736 ORTHO05D009783 1.9e-15 88.2 85 49.4
Zm00001eb382360 Zea mays HOM05D007736 ORTHO05D009783 5.1e-13 80.1 230 30.9
Oeu012723.3 Olea europaea HOM05D007736 ORTHO05D009783 5.3e-10 70.1 128 39.1
HPP92_001092 Vanilla planifolia HOM05D007736 ORTHO05D009783 4.5e-09 67.0 215 29.3


User provided reference genes

Program Settings