Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g047210 Solanum pennellii HOM05D011465 ORTHO05D009737 5.1e-37 157.1 75 100.0
Solyc01g150164.1 Solanum lycopersicum HOM05D011465 ORTHO05D009737 4.3e-36 154.1 75 97.3
PGSC0003DMG400029754 Solanum tuberosum HOM05D011465 ORTHO05D009737 8.2e-35 149.8 75 93.3
Solyc01g104720.3 Solanum lycopersicum HOM05D011465 ORTHO05D009737 7.7e-25 116.7 75 73.3
Sopen01g047250 Solanum pennellii HOM05D011465 ORTHO05D009737 4.2e-23 110.9 75 73.3
Sopen01g047240 Solanum pennellii HOM05D011465 ORTHO05D009737 9.4e-23 109.8 70 74.3
Peaxi162Scf01290g00250 Petunia axillaris HOM05D011465 ORTHO05D009737 1.8e-21 105.5 75 73.3
PGSC0003DMG400029752 Solanum tuberosum HOM05D011465 ORTHO05D009737 2.2e-19 98.6 72 65.3
CAN.G257.116 Capsicum annuum HOM05D011465 ORTHO05D009737 8.2e-19 96.7 66 65.2
Nitab4.5_0002684g0120 Nicotiana tabacum HOM05D011465 ORTHO05D009737 1.8e-18 95.5 76 68.4
Sopen01g047230 Solanum pennellii HOM05D011465 ORTHO05D009737 4.1e-18 94.4 72 63.9
Solyc01g104710.3 Solanum lycopersicum HOM05D011465 ORTHO05D009737 2.0e-17 92.0 72 62.5
CAN.G1702.6 Capsicum annuum HOM05D011465 ORTHO05D009737 2.9e-16 88.2 68 60.3
PGSC0003DMG400029751 Solanum tuberosum HOM05D011465 ORTHO05D009737 8.5e-16 86.7 56 69.6
Nitab4.5_0010259g0010 Nicotiana tabacum HOM05D011465 ORTHO05D009737 1.1e-15 86.3 64 67.2
PGSC0003DMG400029750 Solanum tuberosum HOM05D011465 ORTHO05D009737 4.0e-13 77.8 48 79.2
Prupe.1G561600 Prunus persica HOM05D008027 ORTHO05D009737 6.3e-11 70.5 70 48.6
BraA08t34629Z Brassica rapa HOM05D008027 ORTHO05D009737 3.1e-10 68.2 72 50.0
Aa31LG7G9220 Aethionema arabicum HOM05D008027 ORTHO05D009737 4.1e-10 67.8 72 47.2
BcaC01g01678 Brassica carinata HOM05D008027 ORTHO05D009737 4.1e-10 67.8 75 48.0
BolC3t19607H Brassica oleracea HOM05D008027 ORTHO05D009737 4.1e-10 67.8 75 48.0
Thhalv10009240m.g Eutrema salsugineum HOM05D008027 ORTHO05D009737 4.1e-10 67.8 75 46.7
Lsat_1_v5_gn_7_79741 Lactuca sativa HOM05D008027 ORTHO05D009737 5.3e-10 67.4 70 48.6
Prupe.4G249100 Prunus persica HOM05D008027 ORTHO05D009737 1.2e-09 66.2 43 62.8
BcaB03g12037 Brassica carinata HOM05D008027 ORTHO05D009737 2.7e-09 65.1 66 51.5
CARHR026260 Cardamine hirsuta HOM05D008027 ORTHO05D009737 2.7e-09 65.1 65 50.8
Sp1g22980 Schrenkiella parvula HOM05D008027 ORTHO05D009737 4.5e-09 64.3 66 50.0
BcaC05g26480 Brassica carinata HOM05D008027 ORTHO05D009737 7.7e-09 63.5 66 48.5
Carub.0001s2529 Capsella rubella HOM05D008027 ORTHO05D009737 7.7e-09 63.5 64 46.9
Migut.N01020 Erythranthe guttata HOM05D008027 ORTHO05D009737 1.7e-08 62.4 70 48.6
BolC5t31257H Brassica oleracea HOM05D008027 ORTHO05D009737 2.2e-08 62.0 66 47.0
ClCG05G009870 Citrullus lanatus HOM05D008027 ORTHO05D009737 2.2e-08 62.0 67 47.8
Gohir.D04G171400 Gossypium hirsutum HOM05D008027 ORTHO05D009737 2.9e-08 61.6 72 45.8
Gorai.012G160300 Gossypium raimondii HOM05D008027 ORTHO05D009737 2.9e-08 61.6 72 45.8
A08p26830 Brassica napus HOM05D008027 ORTHO05D009737 3.8e-08 61.2 63 50.8
Psat0s5304g0040 Pisum sativum HOM05D008027 ORTHO05D009737 3.8e-08 61.2 67 47.8
BcaC05g26684 Brassica carinata HOM05D008027 ORTHO05D009737 5.0e-08 60.8 71 46.5
A09p39140 Brassica napus HOM05D008027 ORTHO05D009737 6.5e-08 60.5 66 47.0
BraA09t39413Z Brassica rapa HOM05D008027 ORTHO05D009737 6.5e-08 60.5 66 47.0
AL1G40080 Arabidopsis lyrata HOM05D008027 ORTHO05D009737 8.5e-08 60.1 65 47.7
C03p73120 Brassica napus HOM05D008027 ORTHO05D009737 8.5e-08 60.1 63 49.2
Gohir.A04G126500 Gossypium hirsutum HOM05D008027 ORTHO05D009737 1.1e-07 59.7 72 44.4
C05p25230 Brassica napus HOM05D008027 ORTHO05D009737 1.9e-07 58.9 63 47.6
AT1G25275 Arabidopsis thaliana HOM05D008027 ORTHO05D009737 3.2e-07 58.2 64 40.6
MD15G1417600 Malus domestica HOM05D008027 ORTHO05D009737 4.2e-07 57.8 58 46.6
Thecc.02G042600 Theobroma cacao HOM05D008027 ORTHO05D009737 4.2e-07 57.8 64 45.3
Dinv24246 Davidia involucrata HOM05D008027 ORTHO05D009737 5.5e-07 57.4 70 41.4
Lj6g0012761 Lotus japonicus HOM05D008027 ORTHO05D009737 5.5e-07 57.4 71 43.7
COL.COLO4_17908 Corchorus olitorius HOM05D008027 ORTHO05D009737 7.2e-07 57.0 61 47.5
RcHm_v2.0_Chr7g0224551 Rosa chinensis HOM05D008027 ORTHO05D009737 7.2e-07 57.0 61 42.6
Glyma.15G049600 Glycine max HOM05D008027 ORTHO05D009737 1.2e-06 56.2 65 46.2
Hma1.2p1_0557F.1_g178210 Hydrangea macrophylla HOM05D008027 ORTHO05D009737 1.2e-06 56.2 70 41.4
Lalb_Chr18g0060771 Lupinus albus HOM05D008027 ORTHO05D009737 2.1e-06 55.5 70 42.9
Nitab4.5_0000249g0410 Nicotiana tabacum HOM05D011465 ORTHO05D009737 2.1e-06 55.5 44 68.2
Oeu018394.1 Olea europaea HOM05D008027 ORTHO05D009737 3.6e-06 54.7 62 46.8
Sed0014181 Sechium edule HOM05D008027 ORTHO05D009737 3.6e-06 54.7 67 41.8
CANSAT11G0026 Cannabis sativa HOM05D008027 ORTHO05D009737 4.7e-06 54.3 67 50.7
Medtr2g007950 Medicago truncatula HOM05D008027 ORTHO05D009737 8.0e-06 53.5 70 40.0


User provided reference genes

Program Settings