Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 8.2e-137 490.3 241 100.0
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 5.4e-104 381.3 241 81.7
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 1.0e-99 367.1 241 78.8
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 1.8e-91 339.7 255 70.6
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 7.3e-85 317.8 217 75.1
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 3.7e-81 305.4 241 65.1
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 6.4e-81 304.7 241 64.3
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 9.2e-80 300.8 253 60.1
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 4.6e-79 298.5 241 62.2
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 3.9e-78 295.4 241 62.2
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 5.1e-78 295.0 246 61.4
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.5e-77 293.5 241 63.5
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.9e-77 293.1 241 62.2
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.5e-77 292.7 241 63.5
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.5e-77 292.7 241 63.5
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 3.3e-77 292.4 241 61.4
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 4.3e-77 292.0 241 61.8
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 4.3e-77 292.0 241 62.2
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.6e-77 291.6 241 63.5
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 7.3e-77 291.2 241 62.2
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 7.3e-77 291.2 241 61.4
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.2e-76 290.4 241 62.2
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.7e-76 288.5 241 59.8
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 6.2e-76 288.1 241 60.2
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 8.1e-76 287.7 241 61.4
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 1.1e-75 287.3 241 59.8
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.4e-75 287.0 241 60.6
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.4e-75 287.0 241 61.0
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 1.4e-75 287.0 241 61.0
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.8e-75 286.6 241 58.5
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 1.8e-75 286.6 241 61.4
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.1e-75 285.8 241 60.6
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 5.2e-75 285.0 241 60.2
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 6.8e-75 284.6 241 58.5
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 6.8e-75 284.6 241 59.3
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 6.8e-75 284.6 241 59.3
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 6.8e-75 284.6 241 60.6
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 6.8e-75 284.6 243 61.3
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 8.9e-75 284.3 241 59.8
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.5e-74 283.5 241 57.3
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 2.0e-74 283.1 241 60.6
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 1.7e-73 280.0 241 58.9
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.7e-73 280.0 241 58.9
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.7e-73 280.0 241 59.8
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.9e-73 278.5 241 58.1
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 6.4e-73 278.1 241 60.2
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 6.4e-73 278.1 241 57.7
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 8.4e-73 277.7 242 60.3
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.1e-72 277.3 241 58.5
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 1.4e-72 276.9 241 55.6
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.4e-72 276.9 241 57.7
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 1.9e-72 276.6 242 60.7
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 2.4e-72 276.2 241 59.8
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 4.2e-72 275.4 241 57.3
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 5.4e-72 275.0 241 58.5
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 5.4e-72 275.0 241 58.5
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 5.4e-72 275.0 241 58.1
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 7.1e-72 274.6 241 58.9
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 7.1e-72 274.6 241 57.7
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 9.3e-72 274.2 241 58.5
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.6e-71 273.5 241 58.1
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 2.1e-71 273.1 241 57.7
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 3.5e-71 272.3 242 58.7
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 6.0e-71 271.6 241 56.8
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 6.0e-71 271.6 241 56.8
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 6.0e-71 271.6 241 56.8
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 7.8e-71 271.2 241 58.9
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 7.8e-71 271.2 241 56.0
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.0e-70 270.8 241 57.3
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.3e-70 270.4 241 58.1
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.3e-70 270.4 241 56.8
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 3.9e-70 268.9 212 66.0
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 6.6e-70 268.1 241 56.4
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.1e-69 267.3 241 56.4
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.1e-69 267.3 241 56.0
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 1.5e-69 266.9 241 56.0
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.9e-69 266.5 241 56.8
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.9e-69 266.5 241 56.8
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.5e-69 266.2 241 57.7
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 2.5e-69 266.2 241 56.0
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 3.3e-69 265.8 241 55.6
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 7.3e-69 264.6 241 56.4
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 7.3e-69 264.6 241 56.4
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 9.6e-69 264.2 241 55.2
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 9.6e-69 264.2 241 55.2
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 1.6e-68 263.5 241 56.8
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 2.8e-68 262.7 241 56.8
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 6.2e-68 261.5 241 58.9
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 8.1e-68 261.2 241 55.2
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 8.1e-68 261.2 241 55.6
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 1.1e-67 260.8 241 55.2
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 4.0e-67 258.8 241 54.4
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 6.9e-67 258.1 241 53.1
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 4.4e-66 255.4 241 53.9
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 1.3e-65 253.8 219 58.9
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.1e-64 250.8 241 51.9
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 3.2e-64 249.2 241 54.8
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.2e-63 247.3 241 53.9
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 7.9e-63 244.6 241 52.7
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.3e-62 243.8 216 56.0
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 8.7e-62 241.1 214 56.5
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 9.6e-61 237.7 234 53.0
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 6.2e-60 235.0 223 53.4
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 1.8e-59 233.4 212 54.7
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.2e-58 230.7 241 47.7
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.0e-54 217.6 241 51.0
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.0e-54 217.6 210 54.3
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 1.8e-54 216.9 198 57.1
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 2.6e-50 203.0 202 52.0
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 5.8e-50 201.8 241 42.3
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 3.8e-49 199.1 241 41.5
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 1.1e-45 187.6 177 55.4
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 1.9e-45 186.8 188 50.5
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 9.6e-45 184.5 238 39.5
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 9.6e-45 184.5 237 39.2
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 1.1e-43 181.0 125 66.4
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.4e-43 180.6 116 70.7
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 2.0e-42 176.8 124 60.5
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 1.0e-41 174.5 125 62.4
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 5.0e-41 172.2 213 42.3
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 9.3e-40 167.9 225 45.3
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 6.1e-39 165.2 155 49.7
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 1.8e-38 163.7 115 67.0
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 3.0e-38 162.9 179 44.7
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 2.8e-36 156.4 116 69.8
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.7e-36 156.0 116 54.3
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 4.8e-36 155.6 173 48.0
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 8.2e-36 154.8 116 54.3
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.9e-32 143.7 153 52.9
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 2.5e-32 143.3 87 66.7
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 4.2e-32 142.5 77 93.5
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 4.2e-32 142.5 186 41.9
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 5.7e-29 132.1 83 79.5
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 9.7e-29 131.3 141 41.8
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.7e-28 130.6 77 84.4
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 1.8e-27 127.1 77 81.8
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 7.7e-26 121.7 77 80.5
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 7.7e-26 121.7 77 80.5
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 1.9e-24 117.1 77 77.9
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 5.5e-24 115.5 75 77.3
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 9.4e-24 114.8 77 72.7
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.0e-22 111.3 77 72.7
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 3.0e-22 109.8 81 58.0
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 2.0e-21 107.1 72 76.4
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.6e-21 106.7 81 65.4
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 1.3e-20 104.4 69 75.4
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.2e-20 103.6 75 69.3
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 3.1e-19 99.8 57 75.4
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 1.7e-17 94.0 99 45.5
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 1.1e-16 91.3 55 72.7
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 2.5e-16 90.1 143 41.3
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 1.8e-14 84.0 63 63.5
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 2.0e-13 80.5 64 56.2
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-12 77.8 69 56.5
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 1.3e-12 77.8 55 58.2
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 4.8e-12 75.9 63 52.4
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 1.4e-11 74.3 64 57.8
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 2.4e-11 73.6 46 78.3
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 3.1e-11 73.2 234 22.6
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 5.3e-11 72.4 69 53.6
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.9e-10 68.9 51 62.7
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 5.5e-08 62.4 162 27.8
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 3.6e-07 59.7 51 52.9


User provided reference genes

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