Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 1.4e-73 279.6 151 100.0
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 3.4e-72 275.0 151 98.0
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 9.9e-72 273.5 151 97.4
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 9.9e-64 246.9 152 87.5
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 2.2e-63 245.7 146 89.0
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 5.6e-59 231.1 152 81.6
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 2.3e-52 209.1 155 72.9
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 5.5e-46 188.0 151 68.9
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 9.3e-46 187.2 151 70.2
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 2.7e-45 185.7 151 70.2
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 4.6e-45 184.9 149 67.8
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 6.0e-45 184.5 151 68.9
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 7.9e-45 184.1 151 68.2
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 6.7e-44 181.0 151 68.2
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 6.7e-44 181.0 151 66.2
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.1e-43 180.3 151 68.2
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.1e-43 180.3 151 67.5
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 1.5e-43 179.9 151 67.5
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.9e-43 179.5 151 66.9
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 3.3e-43 178.7 151 68.9
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 4.3e-43 178.3 151 66.2
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 5.7e-43 177.9 151 66.9
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 7.4e-43 177.6 151 66.2
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 9.6e-43 177.2 151 66.2
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 1.3e-42 176.8 151 65.6
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.6e-42 176.4 151 64.9
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 2.1e-42 176.0 151 65.6
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 3.7e-42 175.3 151 64.9
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 4.8e-42 174.9 151 66.2
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 8.2e-42 174.1 151 61.6
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.2e-42 174.1 151 64.9
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.4e-41 173.3 151 64.9
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.1e-41 172.2 151 64.2
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.1e-41 172.2 151 64.2
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.1e-41 171.8 143 65.7
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 4.1e-41 171.8 151 64.2
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 6.9e-41 171.0 151 64.9
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 9.0e-41 170.6 150 64.0
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.5e-40 169.9 147 63.9
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.5e-40 169.9 151 62.9
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 2.0e-40 169.5 151 61.6
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.4e-40 168.7 143 64.3
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 3.4e-40 168.7 142 66.2
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 7.6e-40 167.5 151 60.9
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 1.7e-39 166.4 151 60.3
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.7e-39 166.4 151 62.9
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.7e-39 166.4 151 62.3
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 2.2e-39 166.0 151 61.6
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.2e-39 166.0 151 64.9
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 2.9e-39 165.6 133 69.2
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 5.0e-39 164.9 151 62.3
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 8.5e-39 164.1 151 61.6
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 8.5e-39 164.1 146 63.0
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.4e-38 163.3 151 62.3
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.9e-38 162.9 151 62.9
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 2.5e-38 162.5 153 60.8
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 9.3e-38 160.6 142 61.3
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 2.1e-37 159.5 148 62.2
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 6.1e-37 157.9 151 57.6
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 7.9e-37 157.5 151 61.6
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.0e-36 157.1 147 57.8
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 3.9e-36 155.2 138 62.3
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.5e-35 153.3 142 62.7
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 3.7e-34 148.7 151 59.6
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.1e-33 147.1 138 58.7
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 4.1e-33 145.2 127 66.1
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 4.1e-33 145.2 127 65.4
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 4.1e-33 145.2 120 65.0
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 9.1e-33 144.1 122 63.1
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.4e-32 142.1 121 66.9
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 3.4e-32 142.1 121 66.9
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 5.9e-32 141.4 151 53.6
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.0e-31 140.6 151 55.6
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.7e-31 139.8 151 55.6
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 2.2e-31 139.4 151 57.0
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 5.0e-31 138.3 151 58.9
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.1e-30 137.1 119 60.5
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 1.1e-30 137.1 121 64.5
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.4e-30 136.7 112 67.0
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.9e-30 136.3 138 58.0
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 5.5e-30 134.8 151 53.6
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 5.5e-30 134.8 152 53.3
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 7.2e-30 134.4 151 54.3
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 7.2e-30 134.4 151 52.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 7.2e-30 134.4 151 52.3
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 9.4e-30 134.0 112 66.1
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 9.4e-30 134.0 151 56.3
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.1e-29 132.9 152 52.6
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.1e-29 132.9 152 52.6
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 2.1e-29 132.9 151 55.0
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.0e-28 130.6 152 52.0
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.4e-28 130.2 120 60.8
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 1.4e-28 130.2 151 53.0
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 1.4e-28 130.2 151 51.0
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 3.0e-28 129.0 151 53.0
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 3.0e-28 129.0 151 53.0
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 3.0e-28 129.0 151 53.0
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 3.0e-28 129.0 151 53.0
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 3.0e-28 129.0 151 53.0
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.9e-28 128.6 115 60.0
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.9e-28 128.6 147 51.7
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 6.7e-28 127.9 151 52.3
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 8.8e-28 127.5 151 53.0
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 8.8e-28 127.5 151 53.0
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 1.1e-27 127.1 151 52.3
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 1.5e-27 126.7 151 53.0
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 2.6e-27 125.9 151 52.3
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 4.8e-26 121.7 152 52.0
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 6.3e-26 121.3 146 47.3
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 6.3e-26 121.3 152 52.6
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 8.2e-26 120.9 113 61.1
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 8.2e-26 120.9 112 60.7
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 5.3e-25 118.2 126 54.0
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.2e-24 117.1 152 50.7
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.1e-22 110.5 153 49.7
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.6e-21 106.7 62 87.1
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 7.4e-19 97.8 151 41.1
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.3e-18 97.1 121 51.2
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 3.7e-18 95.5 92 58.7
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 2.6e-16 89.4 89 53.9
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 5.9e-16 88.2 99 53.5
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.0e-15 87.4 80 58.8
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.3e-15 87.0 77 62.3
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.7e-15 86.7 91 52.7
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 7.2e-14 81.3 76 60.5
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 4.0e-12 75.5 59 66.1
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-11 73.2 104 44.2
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-11 73.2 104 45.2
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 1.1e-09 67.4 92 48.9
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 7.0e-09 64.7 69 50.7
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.9e-08 61.6 101 48.5
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 5.9e-08 61.6 101 48.5
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.2e-06 55.5 69 49.3


User provided reference genes

Program Settings