Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g045480 Solanum pennellii HOM05D008164 ORTHO05D010222 2.2e-129 465.7 249 100.0
Solyc01g103070.2 Solanum lycopersicum HOM05D008164 ORTHO05D010222 1.2e-79 300.4 168 98.2
PGSC0003DMG400038752 Solanum tuberosum HOM05D008164 ORTHO05D010222 6.9e-62 241.5 162 87.0
Peaxi162Scf00011g00188 Petunia axillaris HOM05D008164 ORTHO05D010222 8.7e-49 198.0 169 75.1
Nitab4.5_0004668g0050 Nicotiana tabacum HOM05D008164 ORTHO05D010222 3.7e-47 192.6 149 80.5
Nitab4.5_0008306g0040 Nicotiana tabacum HOM05D008164 ORTHO05D010222 4.3e-40 169.1 144 77.8
Solyc01g103060.4 Solanum lycopersicum HOM05D008047 ORTHO05D009832 1.1e-27 127.9 67 94.0
Cc02_g23560 Coffea canephora HOM05D008164 ORTHO05D010222 7.4e-24 115.2 179 48.6
PGSC0003DMG400020710 Solanum tuberosum HOM05D008047 ORTHO05D009832 4.1e-22 109.4 52 98.1
Dinv29630 Davidia involucrata HOM05D000112 ORTHO05D000564 9.1e-22 108.2 173 49.7
Ciclev10002734m.g Citrus clementina HOM05D008164 ORTHO05D010222 4.5e-21 105.9 176 39.2
CAN.G855.49 Capsicum annuum HOM05D008047 ORTHO05D009832 1.3e-20 104.4 62 83.9
Cfa004447 Carpinus fangiana HOM05D008164 ORTHO05D010222 3.8e-20 102.8 172 47.7
Nitab4.5_0003120g0010 Nicotiana tabacum HOM05D008047 ORTHO05D009832 3.8e-20 102.8 55 85.5
Nitab4.5_0008306g0030 Nicotiana tabacum HOM05D008047 ORTHO05D009832 6.5e-20 102.1 67 71.6
Haze_09987 Corylus avellana HOM05D008164 ORTHO05D010222 5.5e-19 99.0 171 48.5
Rhsim11G0118100 Rhododendron simsii HOM05D008164 ORTHO05D010222 2.7e-18 96.7 164 50.6
CiPaw.05G001800 Carya illinoinensis HOM05D008164 ORTHO05D010222 6.7e-17 92.0 166 38.0
Lj5P282T61 Lonicera japonica HOM05D008164 ORTHO05D010222 6.7e-17 92.0 181 47.0
QL02p103286 Quercus lobata HOM05D008164 ORTHO05D010222 1.1e-16 91.3 172 44.8
TAR628G0422 Trochodendron aralioides HOM05D008164 ORTHO05D010222 1.1e-16 91.3 165 38.2
Sc23g0003940 Simmondsia chinensis HOM05D008164 ORTHO05D010222 2.0e-16 90.5 166 46.4
Duzib235G0793 Durio zibethinus HOM05D008164 ORTHO05D010222 2.6e-16 90.1 170 39.4
Nitab4.5_0000460g0010 Nicotiana tabacum HOM05D008047 ORTHO05D009832 2.6e-16 90.1 45 88.9
Gohir.D05G110300 Gossypium hirsutum HOM05D008164 ORTHO05D010222 3.3e-16 89.7 165 48.5
Gorai.009G114500 Gossypium raimondii HOM05D008164 ORTHO05D010222 3.3e-16 89.7 165 48.5
Thecc.06G017700 Theobroma cacao HOM05D008164 ORTHO05D010222 4.4e-16 89.4 167 38.9
Lsat_1_v5_gn_9_121861 Lactuca sativa HOM05D008164 ORTHO05D010222 2.2e-15 87.0 173 42.2
Oeu043611.1 Olea europaea HOM05D008164 ORTHO05D010222 2.2e-15 87.0 163 49.1
Gohir.A05G110000 Gossypium hirsutum HOM05D008164 ORTHO05D010222 4.8e-15 85.9 169 37.9
DCAR_003281 Daucus carota HOM05D008164 ORTHO05D010222 1.8e-14 84.0 174 37.4
Manes.10G108200 Manihot esculenta HOM05D008164 ORTHO05D010222 2.4e-14 83.6 126 43.7
Migut.N00863 Erythranthe guttata HOM05D008164 ORTHO05D010222 1.6e-13 80.9 170 33.5
Potri.003G001200 Populus trichocarpa HOM05D008164 ORTHO05D010222 2.6e-13 80.1 121 43.0
Atru.chr6.2719 Acer truncatum HOM05D008047 ORTHO05D009832 6.5e-12 75.5 49 69.4
TWI14G0748 Tripterygium wilfordii HOM05D008164 ORTHO05D010222 6.5e-12 75.5 166 45.8
Sp7g22250 Schrenkiella parvula HOM05D008164 ORTHO05D010222 8.5e-12 75.1 162 36.4
THA.LOC104822430 Tarenaya hassleriana HOM05D008047 ORTHO05D009832 8.5e-12 75.1 64 59.4
Atru.chr6.245 Acer truncatum HOM05D008164 ORTHO05D010222 1.1e-11 74.7 191 33.5
PSO017G5192 Papaver somniferum HOM05D008164 ORTHO05D010222 3.2e-11 73.2 161 36.0
Prupe.1G585100 Prunus persica HOM05D008164 ORTHO05D010222 3.2e-11 73.2 190 42.1
Rhsim08G0038000 Rhododendron simsii HOM05D008047 ORTHO05D009832 3.2e-11 73.2 49 65.3
Peaxi162Scf00011g01846 Petunia axillaris HOM05D008047 ORTHO05D009832 4.2e-11 72.8 37 86.5
Glyma.12G164000 Glycine max HOM05D008164 ORTHO05D010222 5.5e-11 72.4 168 39.9
BcaNung01134 Brassica carinata HOM05D008164 ORTHO05D010222 7.2e-11 72.0 165 33.9
Manes.07G030300 Manihot esculenta HOM05D008164 ORTHO05D010222 1.2e-10 71.2 168 38.7
A10p24460 Brassica napus HOM05D000233 ORTHO05D009832 1.6e-10 70.9 52 63.5
BraA10t44511Z Brassica rapa HOM05D000233 ORTHO05D009832 1.6e-10 70.9 52 63.5
Gohir.D04G073100 Gossypium hirsutum HOM05D008047 ORTHO05D009832 1.6e-10 70.9 53 62.3
Gorai.012G082400 Gossypium raimondii HOM05D008047 ORTHO05D009832 1.6e-10 70.9 53 62.3
QL02p068705 Quercus lobata HOM05D008047 ORTHO05D009832 1.6e-10 70.9 53 58.5
AL6G24550 Arabidopsis lyrata HOM05D008047 ORTHO05D009832 2.7e-10 70.1 52 61.5
BcaNung04178 Brassica carinata HOM05D000233 ORTHO05D009832 3.6e-10 69.7 52 61.5
C02p06480 Brassica napus HOM05D000233 ORTHO05D009832 3.6e-10 69.7 52 61.5
BolC2t06594H Brassica oleracea HOM05D000233 ORTHO05D009832 3.6e-10 69.7 52 61.5
CARHR199530 Cardamine hirsuta HOM05D008047 ORTHO05D009832 3.6e-10 69.7 49 61.2
Ciclev10018048m.g Citrus clementina HOM05D008047 ORTHO05D009832 3.6e-10 69.7 53 60.4
CsaV3_3G020010 Cucumis sativus L. HOM05D000489 ORTHO05D009832 4.7e-10 69.3 76 47.4
DCAR_014455 Daucus carota HOM05D008047 ORTHO05D009832 4.7e-10 69.3 50 60.0
Thecc.04G050500 Theobroma cacao HOM05D008047 ORTHO05D009832 4.7e-10 69.3 61 54.1
TWI32G1069 Tripterygium wilfordii HOM05D008047 ORTHO05D009832 6.1e-10 68.9 55 60.0
MSTRG.9235 Avicennia marina HOM05D008047 ORTHO05D009832 8.0e-10 68.6 55 50.9
Gohir.A05G333400 Gossypium hirsutum HOM05D000489 ORTHO05D009832 8.0e-10 68.6 53 60.4
Aqoxy7G02312 Aquilegia oxysepala HOM05D008164 ORTHO05D010222 1.0e-09 68.2 173 37.6
BcaC04g24244 Brassica carinata HOM05D000233 ORTHO05D009832 1.0e-09 68.2 52 59.6
A02p02240 Brassica napus HOM05D000233 ORTHO05D009832 1.0e-09 68.2 69 52.2
Thhalv10014913m.g Eutrema salsugineum HOM05D008047 ORTHO05D009832 1.0e-09 68.2 52 59.6
BcaC09g50889 Brassica carinata HOM05D008164 ORTHO05D010222 1.4e-09 67.8 172 33.1
C01p19540 Brassica napus HOM05D008164 ORTHO05D010222 1.4e-09 67.8 172 33.1
MELO3C014762.2 Cucumis melo HOM05D000489 ORTHO05D009832 1.4e-09 67.8 76 47.4
A01p15590 Brassica napus HOM05D008164 ORTHO05D010222 1.8e-09 67.4 170 32.4
BraA01t01499Z Brassica rapa HOM05D008164 ORTHO05D010222 1.8e-09 67.4 170 32.4
Eucgr.I01575 Eucalyptus grandis HOM05D008047 ORTHO05D009832 1.8e-09 67.4 73 46.6
AT5G13900 Arabidopsis thaliana HOM05D008047 ORTHO05D009832 2.3e-09 67.0 70 48.6
Oeu034726.1 Olea europaea HOM05D008047 ORTHO05D009832 2.3e-09 67.0 54 48.1
Sp6g30100 Schrenkiella parvula HOM05D008047 ORTHO05D009832 2.3e-09 67.0 58 50.0
SGA_v2.0_scaffold286G47135 Striga asiatica HOM05D008047 ORTHO05D009832 3.0e-09 66.6 46 58.7
TAR376G0048 Trochodendron aralioides HOM05D008164 ORTHO05D010222 3.0e-09 66.6 164 38.4
BolC1t01882H Brassica oleracea HOM05D008164 ORTHO05D010222 4.0e-09 66.2 172 32.6
Migut.F02078 Erythranthe guttata HOM05D008047 ORTHO05D009832 4.0e-09 66.2 81 43.2
GSVIVG01032956001 Vitis vinifera HOM05D008047 ORTHO05D009832 5.2e-09 65.9 49 59.2
Cfa007157 Carpinus fangiana HOM05D008047 ORTHO05D009832 6.7e-09 65.5 56 53.6
Nitab4.5_0004668g0080 Nicotiana tabacum HOM05D008047 ORTHO05D009832 6.7e-09 65.5 67 59.7
BcaC04g19068 Brassica carinata HOM05D000233 ORTHO05D009832 1.2e-08 64.7 52 55.8
Prupe.3G314800 Prunus persica HOM05D008047 ORTHO05D009832 1.2e-08 64.7 56 55.4
Aa31LG11G15460 Aethionema arabicum HOM05D008047 ORTHO05D009832 1.5e-08 64.3 69 47.8
ATR0580G429 Amborella trichopoda HOM05D008164 ORTHO05D010222 1.5e-08 64.3 165 31.5
ClCG05G012510 Citrullus lanatus HOM05D008047 ORTHO05D009832 1.5e-08 64.3 51 56.9
Cpa.g.sc70.44 Carica papaya HOM05D008047 ORTHO05D009832 2.0e-08 63.9 69 44.9
Lj5g0012387 Lotus japonicus HOM05D008047 ORTHO05D009832 2.0e-08 63.9 55 54.5
Nn3g16226 Nelumbo nucifera HOM05D008047 ORTHO05D009832 2.0e-08 63.9 74 47.3
Sc07g0003900 Simmondsia chinensis HOM05D008047 ORTHO05D009832 2.0e-08 63.9 54 55.6
Haze_14960 Corylus avellana HOM05D008047 ORTHO05D009832 2.6e-08 63.5 80 42.5
FAN05G0159 Fragaria x ananassa HOM05D008047 ORTHO05D009832 2.6e-08 63.5 53 56.6
Lj7P618T36 Lonicera japonica HOM05D008047 ORTHO05D009832 2.6e-08 63.5 43 65.1
COL.COLO4_13397 Corchorus olitorius HOM05D008047 ORTHO05D009832 3.3e-08 63.2 64 50.0
FvH4_6g54420 Fragaria vesca HOM05D008047 ORTHO05D009832 3.3e-08 63.2 53 56.6
FAN09G0295 Fragaria x ananassa HOM05D008047 ORTHO05D009832 3.3e-08 63.2 53 56.6
FAN09G4097 Fragaria x ananassa HOM05D008047 ORTHO05D009832 3.3e-08 63.2 53 56.6
FAN14G5573 Fragaria x ananassa HOM05D000154 ORTHO05D000092 3.3e-08 63.2 53 56.6
SGA_v2.0_scaffold8G04458 Striga asiatica HOM05D008164 ORTHO05D010222 3.3e-08 63.2 173 40.5
Cc05_g15210 Coffea canephora HOM05D008047 ORTHO05D009832 5.7e-08 62.4 45 53.3
HanXRQChr09g0255591 Helianthus annuus HOM05D008047 ORTHO05D009832 5.7e-08 62.4 54 55.6
PGR142G0304 Punica granatum HOM05D008164 ORTHO05D010222 5.7e-08 62.4 143 36.4
Manes.04G094800 Manihot esculenta HOM05D008047 ORTHO05D009832 7.5e-08 62.0 61 50.8
TAR622G0472 Trochodendron aralioides HOM05D008047 ORTHO05D009832 7.5e-08 62.0 43 60.5
Glyma.16G148900 Glycine max HOM05D008047 ORTHO05D009832 9.7e-08 61.6 78 44.9
Lsat_1_v5_gn_4_185720 Lactuca sativa HOM05D008047 ORTHO05D009832 9.7e-08 61.6 49 55.1
MD17G1004800 Malus domestica HOM05D008047 ORTHO05D009832 9.7e-08 61.6 53 49.1
RcHm_v2.0_Chr2g0176671 Rosa chinensis HOM05D008047 ORTHO05D009832 9.7e-08 61.6 43 60.5
C09p63200 Brassica napus HOM05D008047 ORTHO05D009832 1.3e-07 61.2 40 62.5
FAN02G1422 Fragaria x ananassa HOM05D008047 ORTHO05D009832 2.8e-07 60.1 43 58.1
FAN18G4000 Fragaria x ananassa HOM05D008164 ORTHO05D010222 2.8e-07 60.1 122 36.1
Phvul.004G068800 Phaseolus vulgaris HOM05D008047 ORTHO05D009832 2.8e-07 60.1 55 52.7
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 3.7e-07 59.7 49 49.0
FAN04G0245 Fragaria x ananassa HOM05D008164 ORTHO05D010222 4.8e-07 59.3 122 38.5
TPR.G7287 Trifolium pratense HOM05D008047 ORTHO05D009832 4.8e-07 59.3 67 46.3
ECA232G1047 Erigeron canadensis HOM05D008047 ORTHO05D009832 6.3e-07 58.9 54 50.0
Psat7g255760 Pisum sativum HOM05D008047 ORTHO05D009832 6.3e-07 58.9 81 38.3
Cpa.g.sc173.30 Carica papaya HOM05D008164 ORTHO05D010222 8.2e-07 58.5 172 32.6
Medtr4g011070 Medicago truncatula HOM05D008047 ORTHO05D009832 8.2e-07 58.5 82 40.2
CANSAT64G2909 Cannabis sativa HOM05D008047 ORTHO05D009832 1.1e-06 58.2 52 53.8
FvH4_5g28060 Fragaria vesca HOM05D008164 ORTHO05D010222 1.4e-06 57.8 183 39.9
Thhalv10026492m.g Eutrema salsugineum HOM05D008164 ORTHO05D010222 2.4e-06 57.0 164 31.1
PSO478G3084 Papaver somniferum HOM05D008164 ORTHO05D010222 2.4e-06 57.0 143 30.1
BcaC09g50645 Brassica carinata HOM05D008164 ORTHO05D010222 3.1e-06 56.6 165 30.3
C01p22560 Brassica napus HOM05D008164 ORTHO05D010222 3.1e-06 56.6 165 30.3
BolC1t02189H Brassica oleracea HOM05D008164 ORTHO05D010222 3.1e-06 56.6 165 30.3
Hund04128 Selenicereus undatus HOM05D008047 ORTHO05D009832 3.1e-06 56.6 67 37.3
AUR62017473 Chenopodium quinoa HOM05D001858 ORTHO05D009832 4.1e-06 56.2 69 36.2
Phvul.006G221400 Phaseolus vulgaris HOM05D045043 ORTHO05D010222 4.1e-06 56.2 172 36.0
EL10Ac6g13897 Beta vulgaris HOM05D001858 ORTHO05D009832 7.0e-06 55.5 78 33.3
VMungo0464G1119 Vigna mungo HOM05D008047 ORTHO05D009832 7.0e-06 55.5 42 54.8
AUR62042859 Chenopodium quinoa HOM05D008047 ORTHO05D009832 9.1e-06 55.1 64 35.9


User provided reference genes

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