Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 0.0e+00 1282.3 722 100.0
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 0.0e+00 1273.5 722 97.1
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 0.0e+00 1125.9 726 85.5
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 0.0e+00 1112.1 744 83.2
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 2.4e-296 1021.9 726 80.0
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 4.0e-272 941.4 723 73.4
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 9.9e-271 936.8 723 73.9
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 1.1e-261 906.7 722 70.6
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 4.2e-261 904.8 723 69.6
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 9.7e-258 893.6 729 69.1
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 2.2e-257 892.5 723 69.2
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 1.7e-254 882.9 752 67.7
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 1.7e-254 882.9 729 68.4
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 4.2e-253 878.2 728 68.1
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 2.7e-252 875.5 731 68.4
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 5.1e-251 871.3 723 67.8
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 1.2e-247 860.1 732 66.3
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 1.1e-245 853.6 810 61.5
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 1.0e-243 847.0 704 69.6
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 3.0e-243 845.5 733 65.3
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 3.9e-243 845.1 725 67.0
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 2.6e-242 842.4 698 67.6
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 2.6e-242 842.4 724 66.4
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 5.7e-242 841.3 724 66.0
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.3e-241 840.1 727 67.8
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 1.1e-240 837.0 701 67.6
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 4.1e-240 835.1 730 66.6
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 1.3e-238 830.1 728 67.9
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 2.2e-238 829.3 722 65.9
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 5.0e-238 828.2 724 67.4
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 1.8e-235 819.7 730 65.2
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 5.2e-235 818.1 723 64.6
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 8.8e-235 817.4 731 64.6
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 3.3e-234 815.5 725 65.7
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 5.7e-234 814.7 713 64.1
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 5.7e-234 814.7 724 65.2
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 9.7e-234 813.9 693 66.1
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 3.1e-232 808.9 725 64.8
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 3.1e-232 808.9 723 65.8
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 5.3e-232 808.1 725 64.1
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 7.0e-232 807.7 727 63.4
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 3.5e-231 805.4 724 63.1
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 1.3e-230 803.5 726 64.9
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 1.7e-230 803.1 723 62.9
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 2.9e-230 802.4 727 63.1
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 6.5e-230 801.2 723 63.1
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 1.1e-229 800.4 728 63.0
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 1.5e-229 800.0 727 63.5
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 1.5e-229 800.0 811 59.9
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 1.9e-229 799.7 731 62.9
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 4.2e-229 798.5 724 63.4
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 9.4e-229 797.3 722 62.9
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 1.0e-227 793.9 731 62.1
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 4.0e-227 792.0 672 67.7
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 1.5e-226 790.0 725 61.8
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 2.0e-226 789.6 726 63.6
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 2.0e-226 789.6 722 63.2
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 4.4e-226 788.5 731 62.0
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 3.7e-225 785.4 722 64.0
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 3.7e-225 785.4 725 63.2
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 2.4e-224 782.7 725 62.9
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 3.1e-224 782.3 727 61.9
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 5.3e-224 781.6 731 62.1
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 9.1e-224 780.8 722 63.0
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 5.0e-222 775.0 726 62.8
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 5.0e-222 775.0 695 66.3
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 3.0e-219 765.8 696 63.6
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.0e-218 763.1 729 62.1
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 2.8e-217 759.2 741 60.1
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 6.3e-217 758.1 724 61.5
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 2.9e-214 749.2 726 61.3
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 2.9e-214 749.2 726 61.3
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 5.5e-213 745.0 722 61.2
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.6e-212 743.4 747 61.6
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 2.3e-211 739.6 723 61.3
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 2.8e-209 732.6 693 62.5
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 3.3e-205 719.2 725 59.2
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 3.3e-205 719.2 795 56.7
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 2.1e-204 716.5 729 60.2
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 3.6e-204 715.7 727 61.9
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 1.4e-203 713.8 697 63.1
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 3.4e-202 709.1 727 61.1
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 1.7e-201 706.8 673 60.5
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 6.4e-201 704.9 725 59.9
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 1.2e-194 684.1 778 56.2
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 6.6e-190 668.3 660 60.9
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 3.2e-184 649.4 674 58.5
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 6.6e-182 641.7 730 53.3
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 3.2e-176 622.9 363 93.7
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 8.4e-169 598.2 730 50.4
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 3.3e-165 586.3 371 89.2
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 2.1e-159 567.0 594 58.6
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 3.9e-158 562.8 725 48.6
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 1.9e-152 543.9 577 56.2
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 1.8e-134 484.2 359 73.0
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 2.1e-127 460.7 554 53.1
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 6.7e-126 455.7 297 80.1
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 5.0e-121 439.5 424 61.8
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 6.1e-119 432.6 582 49.3
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 4.8e-116 422.9 427 61.6
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 2.4e-115 420.6 277 80.5
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 3.1e-86 323.9 701 34.7
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 7.8e-82 309.3 346 56.4
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 2.4e-75 287.7 725 32.3
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 1.2e-74 285.4 501 43.5
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 1.7e-73 281.6 686 30.3
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 5.6e-72 276.6 444 43.2
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 1.6e-71 275.0 272 60.7
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 1.7e-68 265.0 373 48.5
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 2.2e-68 264.6 705 29.4
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 9.2e-67 259.2 710 29.7
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 4.9e-60 236.9 675 32.9
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 4.6e-34 150.6 137 60.6
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 1.1e-24 119.4 99 67.7
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.5e-24 119.0 84 66.7
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 4.3e-24 117.5 110 57.3
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 2.8e-23 114.8 510 24.7
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 7.2e-19 100.1 124 49.2
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 6.1e-18 97.1 109 57.8
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 1.0e-17 96.3 184 41.8
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 2.5e-16 91.7 170 37.6
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 1.4e-14 85.9 94 52.1
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 2.4e-14 85.1 104 45.2
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 4.1e-14 84.3 70 62.9
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.1e-14 84.3 54 81.5
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 6.9e-14 83.6 105 51.4
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 2.2e-12 78.6 56 71.4
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 5.0e-12 77.4 118 36.4
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.7e-10 71.6 58 63.8
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 6.1e-10 70.5 154 31.8
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 1.1e-06 59.7 41 73.2
Rhsim13G0121700 Rhododendron simsii HOM05D003220 ORTHO05D003944 3.1e-06 58.2 52 55.8
PSO017G4247 Papaver somniferum HOM05D006009 ORTHO05D007389 9.1e-06 56.6 126 39.7


User provided reference genes

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