Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 1.9e-146 522.7 302 100.0
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 9.3e-146 520.4 302 99.7
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 9.3e-130 467.2 316 88.6
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 3.0e-104 382.5 305 71.1
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 1.1e-103 380.6 316 70.9
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.7e-102 376.7 302 76.5
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 3.7e-102 375.6 275 79.6
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 2.4e-101 372.9 302 75.8
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 3.1e-101 372.5 301 75.1
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 4.1e-101 372.1 332 64.2
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 7.0e-101 371.3 302 68.9
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 9.1e-101 370.9 302 75.2
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 9.1e-101 370.9 306 66.0
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 2.6e-100 369.4 309 74.8
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 1.1e-98 364.0 305 68.5
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.9e-98 363.2 303 73.9
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 3.2e-98 362.5 300 70.0
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 4.2e-98 362.1 303 65.7
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 7.2e-98 361.3 316 64.6
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 2.7e-97 359.4 305 69.5
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.7e-97 359.4 301 71.4
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 3.6e-97 359.0 306 69.3
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 6.1e-97 358.2 305 71.1
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 2.3e-96 356.3 306 70.6
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 6.8e-96 354.8 309 70.9
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 6.8e-96 354.8 305 72.1
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 8.8e-96 354.4 311 69.1
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 8.8e-96 354.4 305 71.8
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 8.8e-96 354.4 302 69.2
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.2e-95 354.0 305 74.1
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.5e-95 353.6 309 68.6
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 1.5e-95 353.6 341 67.4
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 2.0e-95 353.2 301 64.5
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 9.8e-95 350.9 302 71.5
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.2e-94 349.7 303 64.4
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 2.8e-94 349.4 302 68.9
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 4.8e-94 348.6 307 69.1
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 8.3e-94 347.8 283 76.3
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.4e-93 346.3 284 77.1
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 3.1e-93 345.9 302 71.2
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 7.0e-93 344.7 303 71.3
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.0e-92 343.2 304 70.4
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 3.5e-92 342.4 301 66.1
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 7.7e-92 341.3 270 67.8
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 1.3e-91 340.5 306 66.3
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 1.3e-91 340.5 302 61.3
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 3.8e-91 339.0 302 68.5
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 1.9e-90 336.7 303 62.0
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 2.5e-90 336.3 320 67.8
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 3.2e-90 335.9 308 70.8
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 3.6e-89 332.4 305 60.3
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 4.7e-89 332.0 301 64.8
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 8.0e-89 331.3 247 80.6
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.0e-88 330.9 283 71.0
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.0e-88 330.9 305 60.3
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.0e-88 328.9 308 63.3
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 4.0e-88 328.9 304 62.2
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 2.0e-87 326.6 195 85.6
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 3.4e-87 325.9 302 59.9
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 1.4e-85 320.5 308 64.0
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.1e-85 319.3 308 63.6
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 7.7e-84 314.7 303 58.1
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 1.0e-83 314.3 303 68.0
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.3e-83 313.9 303 64.7
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 6.6e-83 311.6 304 64.1
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 8.6e-83 311.2 303 64.4
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 2.5e-82 309.7 331 60.7
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 3.3e-82 309.3 307 63.8
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 9.5e-82 307.8 176 86.9
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 2.6e-79 299.7 302 65.9
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 5.7e-79 298.5 309 64.7
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 3.7e-78 295.8 292 59.9
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 2.4e-77 293.1 289 64.0
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.6e-76 290.4 341 59.2
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.7e-76 289.7 302 64.6
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 7.8e-76 288.1 303 57.4
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 2.3e-75 286.6 297 59.9
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.1e-74 284.3 276 68.5
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.5e-74 283.9 302 63.6
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.6e-73 280.4 343 55.1
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.7e-73 278.9 305 59.7
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.0e-72 277.7 314 63.4
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 2.3e-72 276.6 287 65.2
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 2.6e-71 273.1 295 55.3
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 3.7e-70 269.2 303 50.8
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 3.7e-70 269.2 303 50.8
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 9.2e-69 264.6 301 60.1
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.6e-68 263.8 307 60.3
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 3.5e-68 262.7 310 56.1
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 7.8e-68 261.5 296 58.1
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.3e-66 256.1 189 68.8
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 4.3e-66 255.8 303 51.2
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 4.3e-66 255.8 303 51.2
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 4.3e-66 255.8 303 51.2
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 5.6e-66 255.4 303 59.4
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 5.6e-66 255.4 303 59.4
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 2.8e-65 253.1 303 57.8
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 6.2e-65 251.9 302 55.0
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.0e-64 249.2 308 53.9
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 4.9e-62 242.3 312 54.5
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 8.3e-62 241.5 314 54.1
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 1.1e-61 241.1 362 50.8
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 3.2e-61 239.6 303 52.1
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.3e-59 234.2 273 59.3
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 5.2e-56 222.2 271 49.8
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.5e-55 220.7 189 64.0
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 7.6e-55 218.4 310 51.6
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 2.2e-54 216.9 304 52.0
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 1.1e-53 214.5 310 53.9
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 3.2e-53 213.0 296 55.7
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.7e-46 190.7 125 70.4
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 4.9e-46 189.1 129 90.7
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.7e-43 180.6 137 68.6
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.5e-42 177.6 137 65.7
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 5.6e-42 175.6 214 50.9
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.5e-39 167.5 158 57.0
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.2e-38 163.7 186 51.6
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.7e-35 154.1 163 71.8
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.9e-30 136.7 105 66.7
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 7.4e-26 122.1 136 51.5
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 3.7e-25 119.8 66 89.4
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 5.8e-23 112.5 98 63.3
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 1.1e-21 108.2 95 63.2
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 1.1e-21 108.2 95 63.2
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.8e-19 100.9 130 47.7
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.8e-16 90.9 48 87.5
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 3.4e-15 86.7 57 71.9
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 1.7e-14 84.3 57 70.2
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 3.9e-11 73.2 68 61.8
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 1.3e-09 68.2 59 64.4
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.3e-09 68.2 75 53.3
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 4.1e-08 63.2 105 40.0
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.2e-07 61.6 101 40.6
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.5e-07 61.2 124 36.3
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 2.0e-07 60.8 105 39.0
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 5.9e-07 59.3 116 37.1
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.0e-06 58.5 29 86.2
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 1.7e-06 57.8 109 36.7
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 5.0e-06 56.2 96 30.2
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 5.0e-06 56.2 125 35.2
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 5.0e-06 56.2 108 40.7
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 6.5e-06 55.8 119 36.1
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 6.5e-06 55.8 42 59.5
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 8.5e-06 55.5 53 49.1
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 8.5e-06 55.5 107 35.5
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 8.5e-06 55.5 116 35.3
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 8.5e-06 55.5 116 35.3
SEGI_21570 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 8.5e-06 55.5 41 56.1
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 8.5e-06 55.5 42 57.1


User provided reference genes

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