Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 5.1e-57 224.2 112 100.0
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.1e-56 223.0 112 99.1
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.7e-52 209.1 113 92.9
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.9e-52 207.6 113 92.0
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 6.5e-52 207.2 113 92.9
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 8.4e-52 206.8 113 93.8
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.5e-48 195.3 112 87.5
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 7.4e-48 193.7 141 74.5
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 5.3e-46 187.6 112 83.0
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.2e-45 186.4 112 83.0
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 6.5e-44 180.6 112 81.2
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 2.5e-43 178.7 112 79.5
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 4.2e-43 177.9 110 80.9
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 3.6e-42 174.9 112 78.6
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 6.1e-42 174.1 112 79.5
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 7.9e-42 173.7 114 76.3
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.9e-41 171.4 114 76.3
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 3.9e-41 171.4 111 78.4
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.5e-40 169.5 114 74.6
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.9e-40 169.1 115 73.9
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 2.5e-40 168.7 112 72.3
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 3.3e-40 168.3 113 74.3
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 9.7e-40 166.8 114 73.7
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.3e-39 166.4 119 72.3
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 1.7e-39 166.0 107 76.6
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.7e-39 166.0 112 74.1
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 2.2e-39 165.6 114 78.9
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.2e-39 165.6 105 78.1
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.8e-39 165.2 114 76.3
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.7e-39 164.9 111 71.2
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 3.7e-39 164.9 111 74.8
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 6.3e-39 164.1 112 77.7
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 8.2e-39 163.7 112 73.2
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 8.2e-39 163.7 112 76.8
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.1e-38 163.3 110 71.8
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.1e-38 163.3 112 75.9
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.4e-38 162.9 114 71.1
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.8e-38 162.5 111 69.4
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.1e-38 161.8 112 72.3
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 4.1e-38 161.4 89 87.6
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 4.1e-38 161.4 112 70.5
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 4.1e-38 161.4 112 73.2
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 4.1e-38 161.4 112 75.0
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 4.1e-38 161.4 89 87.6
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 4.1e-38 161.4 89 87.6
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 4.1e-38 161.4 89 87.6
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.1e-38 161.4 113 70.8
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.3e-38 161.0 112 72.3
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 5.3e-38 161.0 111 73.0
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 6.9e-38 160.6 113 74.3
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 9.1e-38 160.2 98 79.6
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 9.1e-38 160.2 114 75.4
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.2e-37 159.8 112 71.4
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.5e-37 159.5 112 70.5
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 3.4e-37 158.3 116 70.7
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.4e-37 158.3 89 83.1
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.0e-36 156.8 112 67.9
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 1.3e-36 156.4 111 74.8
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.7e-36 156.0 112 71.4
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.2e-36 155.6 89 80.9
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 2.2e-36 155.6 83 88.0
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 2.2e-36 155.6 83 88.0
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 2.2e-36 155.6 83 88.0
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.8e-36 154.8 112 67.9
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 6.5e-36 154.1 107 76.6
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 6.5e-36 154.1 111 72.1
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 6.5e-36 154.1 113 69.9
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 8.5e-36 153.7 89 82.0
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 8.5e-36 153.7 98 78.6
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 1.1e-35 153.3 85 84.7
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.9e-35 152.5 111 70.3
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 2.5e-35 152.1 114 68.4
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 3.2e-35 151.8 112 66.1
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.2e-35 151.8 118 64.4
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 4.2e-35 151.4 85 85.9
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 4.2e-35 151.4 85 85.9
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 4.2e-35 151.4 97 78.4
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 4.2e-35 151.4 112 66.1
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 4.2e-35 151.4 112 66.1
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 5.5e-35 151.0 112 66.1
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 7.2e-35 150.6 112 66.1
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 9.4e-35 150.2 110 71.8
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 9.4e-35 150.2 108 67.6
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.2e-34 149.8 112 66.1
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.2e-34 149.8 87 81.6
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-34 149.4 112 65.2
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-34 149.4 112 66.1
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.6e-34 149.4 155 54.8
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.1e-34 149.1 110 70.9
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 2.7e-34 148.7 112 66.1
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 3.6e-34 148.3 87 80.5
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 3.6e-34 148.3 146 56.8
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 3.6e-34 148.3 116 63.8
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.6e-34 148.3 112 64.3
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 6.1e-34 147.5 113 64.6
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.0e-33 146.7 112 66.1
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.4e-33 146.4 112 65.2
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.9e-33 144.8 96 75.0
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 6.7e-33 144.1 112 61.6
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 6.7e-33 144.1 112 61.6
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.8e-33 143.7 112 67.9
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.1e-32 143.3 113 62.8
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 1.1e-32 143.3 95 75.8
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.5e-32 142.9 85 80.0
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.5e-32 142.9 115 66.1
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.0e-32 142.5 114 66.7
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 2.6e-32 142.1 116 64.7
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 2.6e-32 142.1 99 72.7
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 3.3e-32 141.7 111 61.3
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 3.3e-32 141.7 86 82.6
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.3e-32 141.7 157 52.9
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 4.4e-32 141.4 112 64.3
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 4.4e-32 141.4 112 60.7
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 5.7e-32 141.0 95 73.7
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 7.4e-32 140.6 113 69.0
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 2.8e-31 138.7 112 67.0
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 6.3e-31 137.5 118 62.7
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.1e-30 136.7 113 62.8
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.8e-30 136.0 112 58.9
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 9.1e-30 133.7 89 73.0
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.2e-29 133.3 129 57.4
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 4.5e-29 131.3 112 57.1
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 7.7e-29 130.6 210 40.5
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 7.7e-29 130.6 81 76.5
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.4e-27 126.3 105 66.7
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.4e-27 126.3 77 72.7
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.4e-27 126.3 77 72.7
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.5e-27 124.4 115 60.0
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 9.4e-27 123.6 72 80.6
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 2.7e-26 122.1 87 73.6
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.7e-26 122.1 77 71.4
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.4e-25 119.8 90 65.6
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 8.8e-25 117.1 85 67.1
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 1.1e-24 116.7 83 67.5
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 5.7e-24 114.4 85 68.2
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.7e-24 114.4 100 62.0
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 4.8e-23 111.3 89 61.8
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 8.2e-23 110.5 95 64.2
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.9e-20 102.1 91 56.0
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.8e-20 101.7 88 62.5
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 8.5e-20 100.5 92 54.3
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 3.2e-19 98.6 92 59.8
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 5.5e-19 97.8 80 63.8
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 6.1e-18 94.4 90 55.6
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.4e-17 93.2 74 62.2
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.8e-17 92.8 77 58.4
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.8e-17 92.8 77 58.4
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.8e-17 92.8 85 56.5
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.6e-16 89.0 51 84.3
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 3.3e-16 88.6 68 64.7
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 7.5e-16 87.4 50 86.0
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.7e-15 86.3 68 54.4
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 6.3e-15 84.3 61 70.5
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 7.7e-13 77.4 60 63.3
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 3.8e-12 75.1 68 50.0
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 3.2e-11 72.0 55 60.0
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 7.2e-11 70.9 46 76.1
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.6e-10 69.7 63 60.3
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.4e-09 66.6 50 72.0
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 5.2e-09 64.7 72 47.2
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 8.8e-09 63.9 57 59.6
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 8.3e-07 57.4 65 41.5
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 8.3e-07 57.4 65 41.5


User provided reference genes

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