Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 0.0e+00 1146.3 574 100.0
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 0.0e+00 1112.4 575 97.0
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 0.0e+00 1078.5 575 94.4
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 2.7e-303 1044.6 576 91.3
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 7.1e-280 966.8 605 81.3
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 2.2e-273 945.3 478 99.6
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 5.0e-257 891.0 604 77.2
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 2.1e-247 859.0 502 85.9
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 1.8e-235 819.3 575 70.6
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 1.9e-232 809.3 574 68.3
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 2.7e-231 805.4 575 69.4
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 2.3e-222 775.8 578 66.3
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 2.9e-220 768.8 575 66.3
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 6.4e-220 767.7 575 64.3
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 1.3e-217 760.0 575 64.9
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.3e-217 759.2 574 66.2
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 3.0e-217 758.8 575 65.6
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 1.1e-216 756.9 574 66.6
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 1.1e-216 756.9 576 63.9
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 3.3e-216 755.4 575 63.8
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 5.6e-216 754.6 577 65.3
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 9.5e-216 753.8 574 65.3
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 2.1e-215 752.7 575 64.7
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 8.0e-215 750.7 575 64.0
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 6.8e-214 747.7 575 63.7
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 9.8e-213 743.8 586 64.7
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.7e-212 743.0 576 64.6
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 3.7e-212 741.9 575 64.0
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.9e-212 741.5 576 64.6
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 1.1e-211 740.3 576 64.6
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 4.1e-211 738.4 575 63.7
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 7.0e-211 737.6 576 64.2
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 7.0e-211 737.6 575 63.0
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 1.2e-210 736.9 576 62.5
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.6e-210 734.9 576 63.7
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 7.8e-210 734.2 576 63.4
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 5.6e-208 728.0 576 63.7
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 2.1e-207 726.1 578 61.6
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 2.3e-206 722.6 578 62.8
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 2.6e-205 719.2 594 60.4
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 4.4e-205 718.4 575 60.3
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 9.8e-205 717.2 576 61.8
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.3e-204 716.8 575 60.7
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 1.3e-204 716.8 575 61.7
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 6.4e-204 714.5 575 61.6
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 8.3e-204 714.1 575 61.7
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 2.4e-203 712.6 576 62.3
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 3.2e-203 712.2 575 62.4
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 9.2e-203 710.7 576 61.8
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 1.2e-202 710.3 575 60.9
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 2.7e-202 709.1 575 60.7
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 2.7e-202 709.1 575 60.9
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 4.6e-202 708.4 575 62.4
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 1.0e-201 707.2 575 60.3
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 3.0e-201 705.7 575 61.2
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 6.6e-201 704.5 575 60.2
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 3.3e-200 702.2 574 60.5
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 4.3e-200 701.8 576 60.1
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 2.8e-199 699.1 576 59.9
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 4.7e-199 698.4 577 58.6
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 2.3e-198 696.0 575 59.0
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 3.1e-198 695.7 575 60.3
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 5.2e-198 694.9 604 57.5
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 5.2e-198 694.9 575 60.5
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 1.5e-197 693.3 575 61.0
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 1.7e-196 689.9 569 60.3
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 1.2e-194 683.7 576 59.0
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 3.0e-193 679.1 645 55.7
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 2.9e-188 662.5 517 63.6
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 1.6e-186 656.8 578 57.8
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 2.1e-186 656.4 575 57.9
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 7.8e-186 654.4 578 57.6
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 8.7e-185 651.0 578 57.1
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 1.5e-184 650.2 578 57.1
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 1.3e-183 647.1 577 57.2
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 1.8e-182 643.3 575 55.7
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 3.8e-180 635.6 576 56.4
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 8.4e-180 634.4 552 58.2
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 1.2e-178 630.6 532 59.4
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 1.6e-178 630.2 578 55.9
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.1e-178 629.8 577 54.6
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 1.1e-176 624.0 552 56.9
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.2e-173 614.0 577 55.5
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.2e-173 614.0 577 55.5
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 1.9e-171 606.7 574 54.7
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 2.4e-171 606.3 517 58.0
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 3.5e-170 602.4 574 54.4
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 3.5e-170 602.4 574 54.4
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 3.0e-169 599.4 497 61.6
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 3.9e-169 599.0 680 47.5
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 6.7e-169 598.2 575 52.5
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 3.2e-163 579.3 442 64.7
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.3e-161 573.9 429 67.4
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 1.4e-158 563.9 548 52.9
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 9.3e-155 551.2 393 68.2
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 5.0e-148 528.9 429 63.2
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 6.9e-142 508.4 385 64.9
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 1.1e-139 501.1 554 47.5
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 7.9e-138 495.0 497 54.9
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.8e-137 493.8 581 46.8
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.4e-126 457.6 462 52.2
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.2e-124 450.3 472 52.3
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 7.2e-123 445.3 367 61.9
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 2.1e-122 443.7 588 41.0
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 1.2e-117 427.9 356 60.7
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 2.2e-111 407.1 579 40.4
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 1.0e-108 398.3 601 37.6
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 3.0e-105 386.7 297 63.0
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.5e-101 373.2 474 47.3
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 1.3e-68 265.0 244 56.6
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 8.4e-63 245.7 279 48.0
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 1.5e-59 235.0 208 58.7
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 1.3e-58 231.9 385 39.5
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 1.3e-52 211.8 528 29.2
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 1.0e-47 195.7 160 60.0
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 2.8e-34 151.0 152 52.6
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 8.2e-34 149.4 99 65.7
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 1.1e-33 149.1 464 25.2
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 1.8e-33 148.3 169 49.1
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 3.1e-33 147.5 74 91.9
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 2.0e-32 144.8 442 26.7
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 1.4e-28 132.1 153 43.1
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 5.1e-28 130.2 387 26.1
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 1.3e-26 125.6 224 38.4
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 9.1e-25 119.4 115 52.2
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 9.1e-25 119.4 115 52.2
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 3.8e-23 114.0 130 46.2
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 8.8e-20 102.8 73 69.9
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.8e-17 95.1 75 61.3
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 2.6e-16 91.3 89 51.7
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 5.9e-16 90.1 52 78.8
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.0e-15 89.4 75 60.0
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-14 85.9 68 58.8
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 2.1e-13 81.6 262 27.9
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 1.8e-09 68.6 45 68.9
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 5.9e-08 63.5 51 54.9
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 2.5e-06 58.2 70 41.4


User provided reference genes

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