Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 2.6e-89 332.0 170 100.0
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.9e-87 325.9 170 98.2
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 2.3e-85 318.9 173 95.4
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 2.2e-80 302.4 173 90.2
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 3.2e-71 271.9 171 81.9
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 2.7e-70 268.9 176 80.1
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 1.8e-69 266.2 170 78.2
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 4.0e-69 265.0 167 80.8
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 5.2e-69 264.6 174 78.7
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 6.8e-69 264.2 175 75.4
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 1.2e-68 263.5 176 77.3
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 1.5e-68 263.1 172 78.5
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 3.4e-68 261.9 170 78.2
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 7.5e-68 260.8 167 77.8
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 7.5e-68 260.8 170 79.4
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 9.8e-68 260.4 174 77.0
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 9.8e-68 260.4 174 77.0
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 1.3e-67 260.0 173 78.6
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 1.7e-67 259.6 171 78.4
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 2.8e-67 258.8 173 76.3
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 2.8e-67 258.8 170 77.6
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 2.8e-67 258.8 173 78.6
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 3.7e-67 258.5 172 76.2
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 4.8e-67 258.1 172 76.2
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 4.8e-67 258.1 168 79.2
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 6.3e-67 257.7 172 75.0
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 6.3e-67 257.7 173 77.5
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 6.3e-67 257.7 171 78.4
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 1.1e-66 256.9 176 75.6
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 1.1e-66 256.9 172 77.9
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 1.1e-66 256.9 171 76.6
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 1.4e-66 256.5 167 77.8
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.4e-66 256.5 172 76.7
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 1.8e-66 256.1 174 77.6
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 3.1e-66 255.4 173 73.4
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 7.0e-66 254.2 164 77.4
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 9.1e-66 253.8 172 76.7
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 1.2e-65 253.4 174 75.3
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 1.6e-65 253.1 173 75.7
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 1.6e-65 253.1 174 74.1
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 1.6e-65 253.1 172 75.6
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 2.0e-65 252.7 180 75.0
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 2.0e-65 252.7 171 77.8
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 2.7e-65 252.3 168 75.0
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 2.7e-65 252.3 168 75.0
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 3.5e-65 251.9 168 75.0
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 3.5e-65 251.9 174 74.7
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 3.5e-65 251.9 174 73.6
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 3.5e-65 251.9 171 77.2
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 4.5e-65 251.5 168 75.0
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 4.5e-65 251.5 172 76.7
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 7.7e-65 250.8 169 75.1
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 7.7e-65 250.8 170 75.9
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 7.7e-65 250.8 173 76.3
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 1.0e-64 250.4 171 75.4
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 1.0e-64 250.4 176 72.7
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.3e-64 250.0 172 77.3
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 1.3e-64 250.0 177 75.7
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 1.3e-64 250.0 165 78.8
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 1.3e-64 250.0 173 75.7
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 1.7e-64 249.6 176 76.1
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 2.2e-64 249.2 171 75.4
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 2.9e-64 248.8 171 76.0
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 3.8e-64 248.4 160 77.5
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 6.5e-64 247.7 174 75.3
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 6.5e-64 247.7 140 87.9
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 6.5e-64 247.7 140 87.9
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 8.5e-64 247.3 176 73.9
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 1.1e-63 246.9 173 74.6
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 1.9e-63 246.1 168 74.4
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.9e-63 246.1 166 76.5
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 2.5e-63 245.7 168 75.0
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 4.2e-63 245.0 179 73.2
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 4.2e-63 245.0 171 74.9
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 1.2e-62 243.4 179 72.6
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 1.6e-62 243.0 177 72.9
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 1.6e-62 243.0 171 71.9
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 2.7e-62 242.3 148 80.4
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 3.6e-62 241.9 140 85.7
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 6.1e-62 241.1 174 71.8
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 6.1e-62 241.1 140 83.6
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 8.0e-62 240.7 163 77.3
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.0e-61 240.4 168 75.0
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 1.0e-61 240.4 173 71.7
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.0e-61 240.4 159 76.1
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 1.4e-61 240.0 169 74.0
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 1.4e-61 240.0 140 82.9
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 2.3e-61 239.2 199 65.3
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 3.0e-61 238.8 167 73.1
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 4.0e-61 238.4 141 85.8
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 4.0e-61 238.4 156 77.6
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 5.2e-61 238.0 140 82.1
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 5.2e-61 238.0 169 73.4
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 6.8e-61 237.7 146 80.1
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 6.8e-61 237.7 176 71.6
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 6.8e-61 237.7 162 75.9
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 6.8e-61 237.7 158 75.9
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 1.2e-60 236.9 145 80.0
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 1.2e-60 236.9 183 69.9
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 3.4e-60 235.3 149 79.9
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 3.4e-60 235.3 206 63.1
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 4.4e-60 235.0 140 82.9
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 6.3e-59 231.1 171 71.9
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 3.1e-58 228.8 174 67.2
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 7.0e-58 227.6 161 74.5
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 9.2e-58 227.3 160 72.5
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 3.5e-57 225.3 162 72.8
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 7.7e-57 224.2 166 67.5
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 6.6e-56 221.1 171 70.2
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 7.3e-55 217.6 125 85.6
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 2.1e-54 216.1 138 74.6
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 3.6e-54 215.3 138 76.1
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 4.0e-53 211.8 148 72.3
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 1.2e-52 210.3 168 62.5
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 1.5e-52 209.9 167 65.3
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 4.4e-52 208.4 170 67.6
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 5.9e-49 198.0 138 71.0
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 1.3e-48 196.8 137 71.5
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 1.5e-44 183.3 157 58.6
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 5.0e-40 168.3 172 59.9
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 1.2e-38 163.7 140 60.7
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 2.0e-36 156.4 123 64.2
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 5.8e-36 154.8 123 61.8
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 6.4e-35 151.4 93 86.0
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 1.4e-34 150.2 123 61.8
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 1.2e-33 147.1 82 82.9
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 3.5e-33 145.6 110 71.8
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 3.5e-33 145.6 123 60.2
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 6.0e-33 144.8 91 83.5
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 7.8e-33 144.4 123 58.5
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 3.9e-32 142.1 123 57.7
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 4.7e-30 135.2 112 62.5
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 1.4e-29 133.7 101 64.4
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 6.8e-29 131.3 137 48.9
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 1.2e-28 130.6 137 51.8
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 1.5e-28 130.2 153 51.6
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 4.1e-26 122.1 80 76.2
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 6.0e-25 118.2 94 69.1
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 3.9e-24 115.5 95 68.4
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 1.1e-23 114.0 82 74.4
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 1.9e-23 113.2 93 66.7
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 2.5e-23 112.8 82 65.9
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 4.3e-23 112.1 86 69.8
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 5.6e-23 111.7 88 62.5
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 1.2e-22 110.5 97 67.0
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 8.9e-21 104.4 103 63.1
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 8.9e-21 104.4 63 87.3
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 9.9e-20 100.9 63 82.5
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 9.9e-20 100.9 70 70.0
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 1.3e-19 100.5 97 64.9
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.7e-19 100.1 63 84.1
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 6.4e-19 98.2 69 68.1
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 1.2e-17 94.0 117 52.1
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 4.6e-17 92.0 56 75.0
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 6.9e-13 78.2 93 50.5
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 9.0e-13 77.8 122 41.8
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 9.0e-13 77.8 63 65.1
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.4e-10 70.5 45 73.3
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 1.4e-10 70.5 64 65.6
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 5.1e-08 62.0 57 56.1
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 1.1e-07 60.8 86 46.5
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.1e-07 60.8 44 63.6
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 4.3e-07 58.9 37 75.7
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 1.3e-06 57.4 62 61.3
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 1.3e-06 57.4 62 61.3
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.6e-06 57.0 123 31.7
SGA_v2.0_scaffold54G19528 Striga asiatica HOM05D016034 ORTHO05D000013 4.8e-06 55.5 30 83.3
Lsat_1_v5_gn_0_21921 Lactuca sativa HOM05D031264 ORTHO05D004783 6.2e-06 55.1 124 34.7


User provided reference genes

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