Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 6.2e-171 604.0 294 100.0
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 1.1e-167 593.2 294 98.0
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 1.3e-165 586.3 294 96.9
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 8.4e-152 540.4 294 89.8
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 6.7e-149 530.8 294 86.4
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.4e-146 523.1 283 87.6
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.0e-140 502.7 282 85.5
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 9.1e-138 493.8 384 67.2
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 1.9e-119 433.0 283 72.4
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.0e-117 427.2 292 69.2
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 9.8e-116 420.6 290 68.3
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 6.3e-115 417.9 291 69.1
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 5.0e-112 408.3 282 68.4
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 1.5e-111 406.8 294 68.4
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.5e-111 406.8 294 65.0
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 2.5e-111 406.0 265 71.3
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 9.4e-111 404.1 287 67.6
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 2.7e-110 402.5 273 68.5
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 6.1e-110 401.4 273 70.0
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.0e-109 399.1 290 65.9
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 4.0e-109 398.7 291 65.3
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 5.2e-109 398.3 290 65.9
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 8.8e-109 397.5 286 66.8
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 8.8e-109 397.5 295 65.1
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.5e-108 396.7 290 65.5
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 2.6e-108 396.0 291 64.6
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 7.5e-108 394.4 275 66.5
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 1.7e-107 393.3 281 66.9
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.4e-106 390.2 284 65.5
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 3.1e-106 389.0 282 65.6
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 4.1e-106 388.7 272 67.3
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 9.2e-106 387.5 298 62.4
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.2e-105 387.1 292 63.4
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 3.5e-105 385.6 290 63.4
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 7.7e-105 384.4 285 66.0
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 1.3e-104 383.6 289 64.0
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.3e-104 383.6 287 62.7
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 3.8e-104 382.1 251 70.1
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 6.6e-104 381.3 294 59.9
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 6.6e-104 381.3 278 62.9
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 1.5e-103 380.2 279 64.2
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 1.9e-103 379.8 294 61.2
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 2.5e-103 379.4 289 62.3
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 8.0e-102 374.4 289 60.6
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.0e-101 374.0 270 64.8
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.0e-101 374.0 287 61.7
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.0e-101 374.0 286 63.6
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 1.4e-101 373.6 284 61.6
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.8e-101 373.2 276 62.7
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 8.9e-101 370.9 285 62.1
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 1.5e-100 370.2 271 63.5
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 2.6e-100 369.4 290 62.4
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 3.4e-100 369.0 284 60.6
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 3.4e-100 369.0 293 58.7
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 9.8e-100 367.5 294 61.6
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 1.7e-99 366.7 284 62.7
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 3.7e-99 365.5 292 58.9
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 4.9e-99 365.2 284 61.3
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 6.4e-99 364.8 270 63.3
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 8.3e-99 364.4 284 61.3
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 1.1e-98 364.0 232 70.7
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 2.4e-98 362.8 287 61.0
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 3.2e-98 362.5 293 58.7
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 5.4e-98 361.7 275 61.5
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 5.4e-98 361.7 288 61.8
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 7.0e-98 361.3 276 61.2
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.0e-97 359.8 264 63.3
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 2.7e-97 359.4 277 59.9
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 4.6e-97 358.6 268 63.8
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.6e-97 358.6 264 62.9
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 5.9e-97 358.2 284 61.3
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 5.9e-97 358.2 286 59.8
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.0e-96 357.5 289 60.2
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 1.3e-96 357.1 270 61.5
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 2.3e-96 356.3 284 60.2
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 6.6e-96 354.8 235 68.9
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 9.5e-95 350.9 245 66.5
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 9.5e-95 350.9 253 62.5
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 1.0e-93 347.4 296 56.4
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 1.2e-92 344.0 264 61.0
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.7e-91 340.1 301 55.5
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 1.0e-88 330.9 261 58.6
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 1.3e-88 330.5 266 58.3
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 1.3e-88 330.5 258 59.3
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 3.0e-88 329.3 274 58.8
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.0e-88 329.3 249 64.3
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.2e-86 323.9 281 54.4
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 6.2e-86 321.6 284 56.0
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 3.1e-85 319.3 250 57.6
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 1.3e-83 313.9 278 56.1
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 7.8e-81 304.7 233 62.7
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 1.6e-78 297.0 273 50.2
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.5e-76 290.4 257 56.4
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 7.3e-71 271.6 266 48.9
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 8.1e-70 268.1 275 48.4
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 8.1e-70 268.1 266 48.5
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 4.0e-69 265.8 266 47.7
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 4.0e-69 265.8 266 47.7
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 5.2e-69 265.4 266 48.1
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 5.2e-69 265.4 218 61.5
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 4.4e-68 262.3 281 47.0
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-67 260.8 256 47.7
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.7e-67 260.4 266 47.4
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 2.9e-67 259.6 273 46.9
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 3.8e-67 259.2 273 46.5
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 3.8e-67 259.2 274 47.1
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 8.4e-67 258.1 267 46.8
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 2.4e-66 256.5 267 47.2
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 3.2e-66 256.1 276 46.7
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 4.2e-66 255.8 277 46.2
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 6.0e-65 251.9 267 46.8
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 3.9e-64 249.2 255 47.1
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 6.6e-64 248.4 251 47.4
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 7.3e-63 245.0 275 46.9
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 3.8e-59 232.6 255 44.3
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.1e-49 200.3 250 40.0
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 6.0e-49 198.7 280 38.9
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 7.4e-47 191.8 197 46.7
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.6e-46 190.7 239 42.7
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 1.5e-44 184.1 267 35.6
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 3.2e-42 176.4 224 40.2
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 3.3e-39 166.4 254 39.4
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 4.3e-39 166.0 175 46.9
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 4.8e-38 162.5 221 40.7
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 6.3e-38 162.2 179 44.7
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.8e-37 160.6 201 43.8
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 4.1e-37 159.5 175 46.9
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 5.3e-37 159.1 201 42.3
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 2.6e-36 156.8 185 45.9
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 5.9e-36 155.6 201 41.3
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 1.7e-35 154.1 198 43.9
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 5.0e-35 152.5 250 38.0
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 3.2e-34 149.8 278 36.0
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 3.9e-32 142.9 137 49.6
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 8.2e-30 135.2 150 45.3
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 4.1e-29 132.9 137 48.9
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.0e-27 128.3 88 69.3
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.3e-27 127.9 103 52.4
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 3.6e-25 119.8 175 39.4
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 3.6e-25 119.8 175 39.4
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 3.9e-24 116.3 185 35.7
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 1.7e-22 110.9 193 36.8
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.1e-21 106.7 72 76.4
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 2.7e-17 93.6 93 51.6
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 3.3e-15 86.7 67 59.7
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 5.7e-15 85.9 115 41.7
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 1.7e-14 84.3 62 56.5
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 1.7e-14 84.3 62 56.5
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 7.5e-07 58.9 151 26.5


User provided reference genes

Program Settings