Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 6.6e-179 630.6 311 100.0
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 1.2e-177 626.3 311 99.4
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 4.4e-175 617.8 311 98.1
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 3.9e-171 604.7 312 95.2
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.6e-167 592.0 311 92.6
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 1.7e-163 579.3 302 92.1
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 4.7e-145 518.1 299 80.3
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.7e-142 509.6 311 77.5
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.2e-142 509.2 299 78.9
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 8.4e-142 507.3 304 78.6
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.1e-141 506.9 311 77.2
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 1.1e-141 506.9 302 78.1
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 2.7e-140 502.3 300 78.0
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 7.8e-140 500.7 297 78.1
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 1.0e-139 500.4 310 73.9
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.3e-139 500.0 307 76.5
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 1.1e-138 496.9 311 75.6
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 1.5e-138 496.5 299 77.6
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 4.3e-138 495.0 302 75.5
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 5.6e-138 494.6 300 75.0
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 9.6e-138 493.8 302 75.8
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 2.8e-137 492.3 310 75.2
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 3.6e-137 491.9 302 74.8
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 8.1e-137 490.7 298 75.8
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 3.1e-136 488.8 302 75.5
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 5.3e-136 488.0 302 74.2
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 6.9e-136 487.6 302 74.2
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 6.9e-136 487.6 300 75.3
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 1.5e-135 486.5 300 75.7
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.0e-135 486.1 307 74.9
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 3.4e-135 485.3 299 75.3
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 5.8e-135 484.6 300 76.0
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 9.9e-135 483.8 299 74.9
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 1.3e-134 483.4 310 73.5
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 1.3e-134 483.4 311 74.3
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.3e-134 483.4 302 74.5
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 1.7e-134 483.0 302 74.8
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.9e-134 482.3 302 73.5
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 3.8e-134 481.9 309 73.1
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 4.9e-134 481.5 302 73.5
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 8.4e-134 480.7 299 74.2
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 8.4e-134 480.7 305 73.1
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 1.1e-133 480.3 302 73.8
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 1.4e-133 479.9 302 72.5
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.4e-133 479.9 303 74.3
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.4e-133 479.9 302 73.2
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 1.9e-133 479.6 306 75.5
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 1.9e-133 479.6 300 75.0
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 1.9e-133 479.6 302 73.2
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 7.1e-133 477.6 302 73.2
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 9.3e-133 477.2 307 73.3
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 1.2e-132 476.9 300 74.0
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 1.2e-132 476.9 299 73.6
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 2.1e-132 476.1 299 73.6
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 2.1e-132 476.1 303 71.9
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 3.5e-132 475.3 311 72.0
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 4.6e-132 474.9 307 72.3
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 6.0e-132 474.6 303 72.3
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 6.0e-132 474.6 302 72.5
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.3e-131 473.4 302 72.8
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 1.3e-131 473.4 302 74.2
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 2.3e-131 472.6 302 71.5
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 2.3e-131 472.6 301 71.1
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 3.9e-131 471.9 381 63.0
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 5.1e-131 471.5 307 70.7
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 8.7e-131 470.7 301 72.8
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 1.5e-130 469.9 304 72.7
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 3.3e-130 468.8 302 72.2
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 6.2e-129 464.5 309 69.6
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 6.2e-129 464.5 310 70.0
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 8.1e-129 464.2 306 69.3
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 8.1e-129 464.2 302 71.9
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 1.8e-128 463.0 300 72.7
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 2.4e-128 462.6 310 69.0
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 2.4e-128 462.6 310 68.7
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 2.4e-128 462.6 381 62.5
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 5.3e-128 461.5 302 70.5
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 6.9e-128 461.1 310 68.4
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 6.9e-128 461.1 315 68.6
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 9.0e-128 460.7 310 68.4
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 1.5e-127 459.9 311 67.8
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 2.6e-127 459.1 310 68.4
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 2.6e-127 459.1 308 68.2
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 4.5e-127 458.4 302 70.9
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 5.8e-127 458.0 308 68.2
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 7.6e-127 457.6 310 67.7
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.0e-126 457.2 309 67.6
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 4.9e-126 454.9 300 70.7
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 1.1e-125 453.8 298 69.8
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 2.5e-125 452.6 308 67.2
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 4.2e-125 451.8 308 67.5
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 9.3e-125 450.7 307 68.1
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.2e-124 450.3 326 66.0
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.8e-123 446.4 300 71.7
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.5e-122 442.6 301 69.4
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 7.4e-122 441.0 301 69.1
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 9.0e-120 434.1 338 62.7
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.3e-118 430.3 315 64.1
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 4.2e-117 425.2 311 65.9
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 3.5e-116 422.2 297 65.0
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 1.9e-114 416.4 302 65.6
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 1.3e-113 413.7 297 64.6
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 7.7e-111 404.4 262 71.8
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 2.2e-110 402.9 311 64.0
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 5.5e-109 398.3 265 68.7
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 1.2e-108 397.1 275 67.6
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.3e-105 387.1 254 69.3
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.7e-100 368.6 237 72.2
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 5.7e-98 361.7 299 57.9
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 2.2e-97 359.8 177 97.2
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 3.7e-97 359.0 305 55.1
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 5.3e-96 355.1 177 96.0
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 6.5e-94 348.2 271 65.7
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 1.5e-90 337.0 291 56.0
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 1.3e-89 334.0 299 55.2
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-88 330.9 201 76.6
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 1.8e-88 330.1 216 68.5
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 4.5e-87 325.5 297 52.5
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 7.7e-79 298.1 211 64.0
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 2.4e-72 276.6 178 75.3
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 8.0e-68 261.5 237 51.9
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 3.2e-64 249.6 181 67.4
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 3.4e-58 229.6 142 72.5
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.1e-52 210.3 190 53.7
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 7.5e-50 201.8 110 89.1
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 2.4e-48 196.8 171 53.2
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 2.1e-47 193.7 130 67.7
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.3e-46 190.3 107 85.0
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.5e-45 186.8 132 65.9
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 6.2e-44 182.2 131 66.4
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-40 171.4 123 65.0
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 5.1e-38 162.5 145 55.9
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 7.1e-32 142.1 105 61.0
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.2e-31 141.4 105 61.9
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-29 134.8 102 60.8
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 5.1e-22 109.4 74 64.9
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 4.9e-17 92.8 52 75.0


User provided reference genes

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