Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g043040 Solanum pennellii HOM05D007570 ORTHO05D009365 1.3e-239 833.9 1036 100.0
PGSC0003DMG400024750 Solanum tuberosum HOM05D007570 ORTHO05D009365 2.9e-207 726.5 1036 94.7
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 3.3e-174 616.7 805 89.8
Nitab4.5_0008329g0060 Nicotiana tabacum HOM05D001281 ORTHO05D009365 8.9e-156 555.4 812 76.2
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 4.3e-142 510.0 361 79.2
CAN.G665.19 Capsicum annuum HOM05D007570 ORTHO05D009365 1.1e-140 505.4 1017 84.9
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 3.5e-120 437.2 361 68.7
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 3.7e-69 267.7 326 50.3
CSS0020002 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 1.8e-55 222.2 334 49.1
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 4.0e-55 221.1 378 42.6
CSS0011257 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 1.3e-53 216.1 334 49.1
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 3.2e-52 211.5 368 41.6
SalBow3G3428 Salvia bowleyana HOM05D007570 ORTHO05D009365 2.3e-50 205.3 367 48.0
MSTRG.27980 Avicennia marina HOM05D007570 ORTHO05D009365 8.1e-48 196.8 369 39.6
HanXRQChr10g0294781 Helianthus annuus HOM05D007570 ORTHO05D009365 3.1e-47 194.9 292 47.3
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 4.0e-47 194.5 293 41.6
Migut.O00416 Erythranthe guttata HOM05D007570 ORTHO05D009365 6.8e-47 193.7 262 42.7
Hma1.2p1_1374F.1_g278810 Hydrangea macrophylla HOM05D007570 ORTHO05D009365 1.1e-44 186.4 284 48.2
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 1.2e-43 183.0 372 39.0
Actinidia35565 Actinidia chinensis HOM05D007570 ORTHO05D009365 2.7e-43 181.8 278 49.3
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 7.8e-43 180.3 342 38.6
Hund19367 Selenicereus undatus HOM05D007570 ORTHO05D009365 1.2e-40 172.9 339 38.6
Migut.N02077 Erythranthe guttata HOM05D007570 ORTHO05D009365 2.1e-40 172.2 363 34.4
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.8e-39 169.1 275 42.2
Ah.10g033640 Amaranthus hybridus HOM05D007570 ORTHO05D009365 1.1e-36 159.8 355 34.6
FvH4_7g02371 Fragaria vesca HOM05D007570 ORTHO05D009365 4.6e-35 154.5 139 54.0
FAN06G1073 Fragaria x ananassa HOM05D007570 ORTHO05D009365 4.6e-35 154.5 139 54.0
Oeu043366.2 Olea europaea HOM05D007570 ORTHO05D009365 4.6e-35 154.5 364 41.8
CiPaw.05G211100 Carya illinoinensis HOM05D007570 ORTHO05D009365 2.3e-34 152.1 159 52.8
Potri.019G043101 Populus trichocarpa HOM05D007570 ORTHO05D009365 1.5e-33 149.4 330 40.9
EL10Ac2g03647 Beta vulgaris HOM05D007570 ORTHO05D009365 4.8e-32 144.4 288 37.5
CANSAT78G1681 Cannabis sativa HOM05D007570 ORTHO05D009365 4.8e-32 144.4 177 47.5
Sabra19G0053700 Salix brachista HOM05D007570 ORTHO05D009365 8.1e-32 143.7 330 39.7
Eucgr.F03126 Eucalyptus grandis HOM05D007570 ORTHO05D009365 1.1e-31 143.3 137 52.6
MD11G1161200 Malus domestica HOM05D007570 ORTHO05D009365 1.4e-31 142.9 151 50.3
FAN01G3111 Fragaria x ananassa HOM05D007570 ORTHO05D009365 1.2e-30 139.8 139 50.4
MD03G1142100 Malus domestica HOM05D007570 ORTHO05D009365 1.2e-30 139.8 179 42.5
Thecc.05G226900 Theobroma cacao HOM05D007570 ORTHO05D009365 1.2e-30 139.8 141 50.4
Aqoxy5G04288 Aquilegia oxysepala HOM05D007570 ORTHO05D009365 1.5e-30 139.4 314 45.5
Atru.chr6.18 Acer truncatum HOM05D007570 ORTHO05D009365 5.8e-30 137.5 367 37.6
Ciclev10030585m.g Citrus clementina HOM05D007570 ORTHO05D009365 9.9e-30 136.7 311 39.5
Eucgr.A02378 Eucalyptus grandis HOM05D007570 ORTHO05D009365 9.9e-30 136.7 135 50.4
Lj4g0005287 Lotus japonicus HOM05D007570 ORTHO05D009365 1.7e-29 136.0 145 49.0
Gohir.A01G216000 Gossypium hirsutum HOM05D007570 ORTHO05D009365 3.8e-29 134.8 161 45.3
Gorai.002G249100 Gossypium raimondii HOM05D007570 ORTHO05D009365 8.4e-29 133.7 157 45.2
Lalb_Chr16g0383631 Lupinus albus HOM05D007570 ORTHO05D009365 1.1e-28 133.3 146 48.6
Gohir.D01G204800 Gossypium hirsutum HOM05D007570 ORTHO05D009365 1.4e-28 132.9 157 45.2
TPR.G12015 Trifolium pratense HOM05D007570 ORTHO05D009365 1.4e-28 132.9 146 47.3
Duzib106G0838 Durio zibethinus HOM05D007570 ORTHO05D009365 1.9e-28 132.5 147 46.9
Nn1g08626 Nelumbo nucifera HOM05D007570 ORTHO05D009365 2.4e-28 132.1 138 61.6
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 4.2e-28 131.3 186 40.9
Psat7g112960 Pisum sativum HOM05D007570 ORTHO05D009365 7.1e-28 130.6 145 46.9
Medtr4g089005 Medicago truncatula HOM05D007570 ORTHO05D009365 9.3e-28 130.2 149 49.0
VMungo0251G2923 Vigna mungo HOM05D007570 ORTHO05D009365 9.3e-28 130.2 156 49.4
Glyma.07G194900 Glycine max HOM05D007570 ORTHO05D009365 1.6e-27 129.4 137 50.4
TWI34G1038 Tripterygium wilfordii HOM05D007570 ORTHO05D009365 1.6e-27 129.4 142 47.9
Ca_18529_v3 Cicer arietinum L. HOM05D001301 ORTHO05D009365 2.7e-27 128.6 145 46.9
ECA234G3939 Erigeron canadensis HOM05D007570 ORTHO05D009365 2.7e-27 128.6 213 45.5
arahy.Tifrunner.gnm1.ann1.3SI8EE Arachis hypogaea HOM05D000112 ORTHO05D009365 7.9e-27 127.1 161 45.3
arahy.Tifrunner.gnm1.ann1.K3ZWQ5 Arachis hypogaea HOM05D000112 ORTHO05D009365 7.9e-27 127.1 161 45.3
Medtr8g064830 Medicago truncatula HOM05D007570 ORTHO05D009365 3.0e-26 125.2 146 46.6
Phvul.002G227100 Phaseolus vulgaris HOM05D007570 ORTHO05D009365 5.1e-26 124.4 152 46.7
HPP92_020822 Vanilla planifolia HOM05D007570 ORTHO05D009365 5.1e-26 124.4 136 58.1
Manes.08G159400 Manihot esculenta HOM05D007570 ORTHO05D009365 3.3e-25 121.7 352 36.6
PSO832G0129 Papaver somniferum HOM05D007570 ORTHO05D009365 3.6e-24 118.2 148 43.9
PSO210G6895 Papaver somniferum HOM05D007570 ORTHO05D009365 1.4e-23 116.3 148 43.9
MD00G1202300 Malus domestica HOM05D007570 ORTHO05D009365 9.9e-22 110.2 170 60.6
MD11G1161100 Malus domestica HOM05D007570 ORTHO05D009365 1.2e-19 103.2 156 61.5
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 8.7e-18 97.1 243 30.9
FAN03G2441 Fragaria x ananassa HOM05D002709 ORTHO05D002914 2.5e-17 95.5 107 46.7
AL6G25570 Arabidopsis lyrata HOM05D007570 ORTHO05D009365 9.6e-17 93.6 160 58.1
AUR62028022 Chenopodium quinoa HOM05D007570 ORTHO05D009365 4.8e-16 91.3 144 55.6
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 6.2e-16 90.9 60 63.3
FAN10G3422 Fragaria x ananassa HOM05D007570 ORTHO05D009365 9.0e-15 87.0 59 64.4
MD00G1202400 Malus domestica HOM05D007570 ORTHO05D009365 5.8e-14 84.3 73 58.9
Thhalv10012597m.g Eutrema salsugineum HOM05D007570 ORTHO05D009365 1.3e-13 83.2 140 36.4
TAR625G0236 Trochodendron aralioides HOM05D007570 ORTHO05D009365 1.9e-12 79.3 147 42.9
Cfa016108 Carpinus fangiana HOM05D007570 ORTHO05D009365 2.5e-12 79.0 251 39.4
Lj5C430G7 Lonicera japonica HOM05D007570 ORTHO05D009365 4.2e-12 78.2 121 40.5
Sp6g29270 Schrenkiella parvula HOM05D007570 ORTHO05D009365 7.1e-12 77.4 62 56.5
Carub.0006s1294 Capsella rubella HOM05D007570 ORTHO05D009365 9.3e-12 77.0 75 49.3
RcHm_v2.0_Chr1g0384651 Rosa chinensis HOM05D007570 ORTHO05D009365 1.2e-11 76.6 145 35.2
BraA10t44455Z Brassica rapa HOM05D007570 ORTHO05D009365 2.1e-11 75.9 62 54.8
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 2.1e-11 75.9 62 53.2
BcaC04g19010 Brassica carinata HOM05D007570 ORTHO05D009365 2.7e-11 75.5 62 54.8
BolC9t59076H Brassica oleracea HOM05D007570 ORTHO05D009365 2.7e-11 75.5 62 54.8
C09p62380 Brassica napus HOM05D007570 ORTHO05D009365 7.9e-11 73.9 141 34.8
BcaB08g36948 Brassica carinata HOM05D007570 ORTHO05D009365 3.0e-10 72.0 55 58.2
AT5G14770 Arabidopsis thaliana HOM05D007570 ORTHO05D009365 6.7e-10 70.9 62 53.2
A10p23910 Brassica napus HOM05D007570 ORTHO05D009365 1.1e-09 70.1 55 56.4
CARHR198540 Cardamine hirsuta HOM05D007570 ORTHO05D009365 1.1e-07 63.5 79 45.6
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 5.3e-07 61.2 171 35.1
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.5e-06 59.7 82 37.8
EL10Ac6g15337 Beta vulgaris HOM05D006931 ORTHO05D008782 2.0e-06 59.3 102 27.5
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.0e-06 59.3 108 32.4
FAN10G4006 Fragaria x ananassa HOM05D007570 ORTHO05D009365 4.5e-06 58.2 153 49.0
Zm00001eb190860 Zea mays HOM05D050025 ORTHO05D050004 5.9e-06 57.8 54 55.6
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 7.6e-06 57.4 95 30.5
Aqoxy1G01656 Aquilegia oxysepala HOM05D018609 ORTHO05D019561 7.6e-06 57.4 92 40.2
Haze_00350 Corylus avellana HOM05D007570 ORTHO05D009365 7.6e-06 57.4 54 53.7
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 7.6e-06 57.4 102 31.4
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 7.6e-06 57.4 60 40.0


User provided reference genes

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