Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 4.4e-267 924.1 480 100.0
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 4.8e-245 850.9 485 93.0
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 2.2e-218 762.3 486 84.6
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 7.8e-163 577.8 488 61.5
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.3e-161 572.4 444 67.1
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 9.2e-156 554.3 491 60.9
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 6.0e-155 551.6 427 66.3
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 6.2e-144 515.0 479 58.9
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 6.9e-143 511.5 363 68.0
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 4.4e-142 508.8 488 56.8
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 1.1e-140 504.2 454 58.4
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 4.2e-140 502.3 499 53.7
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 1.3e-138 497.3 491 57.2
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.7e-138 496.9 488 53.3
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 3.0e-138 496.1 489 54.2
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 6.6e-138 495.0 440 58.6
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 2.5e-137 493.0 497 54.3
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 3.3e-137 492.7 485 56.7
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 2.8e-136 489.6 450 54.0
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 4.8e-136 488.8 435 60.0
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 1.4e-135 487.3 411 62.5
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 3.1e-135 486.1 498 55.6
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 6.9e-135 485.0 479 54.3
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 6.9e-135 485.0 438 56.4
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 4.5e-134 482.3 487 55.2
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 7.6e-134 481.5 490 53.1
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.3e-133 480.7 485 53.2
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 1.3e-133 480.7 437 57.7
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 2.9e-133 479.6 494 54.3
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.9e-133 479.6 487 53.6
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 1.4e-132 477.2 491 54.0
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.4e-132 477.2 491 54.2
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 2.4e-132 476.5 483 54.2
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 2.1e-131 473.4 492 52.6
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.3e-130 470.7 356 65.4
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.3e-130 470.7 356 65.4
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.9e-130 469.2 410 56.6
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 1.1e-129 467.6 481 53.4
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.9e-129 466.8 353 64.9
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 4.3e-129 465.7 437 54.0
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 1.3e-128 464.2 485 52.4
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 1.6e-128 463.8 406 57.4
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 3.7e-128 462.6 476 53.6
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 4.8e-128 462.2 415 60.2
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 1.5e-126 457.2 433 56.6
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 2.0e-126 456.8 483 53.6
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 2.0e-126 456.8 481 53.2
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 2.6e-126 456.4 481 53.4
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 1.0e-125 454.5 481 51.8
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 2.9e-125 453.0 417 56.6
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 4.9e-125 452.2 481 51.6
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 4.9e-125 452.2 481 51.6
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.9e-124 450.3 419 55.8
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.9e-124 450.3 437 54.0
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 2.5e-124 449.9 479 52.2
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 3.2e-124 449.5 490 51.8
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 2.1e-123 446.8 486 52.1
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 3.5e-123 446.0 416 55.5
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 6.0e-123 445.3 331 66.8
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 7.9e-123 444.9 496 50.8
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 7.9e-123 444.9 453 51.4
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 1.3e-122 444.1 481 50.9
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 1.8e-122 443.7 481 50.5
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 1.8e-122 443.7 425 54.8
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.8e-122 443.7 392 56.1
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 3.9e-122 442.6 426 54.9
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 1.1e-121 441.0 481 50.3
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 1.5e-121 440.7 427 54.3
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 5.7e-121 438.7 419 54.7
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 7.4e-121 438.3 393 56.0
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 7.4e-121 438.3 461 51.0
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.3e-120 437.6 391 55.5
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.3e-120 437.6 382 57.1
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 1.6e-120 437.2 491 51.5
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 2.8e-120 436.4 413 56.4
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 1.1e-119 434.5 428 53.0
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 2.4e-119 433.3 491 50.1
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 2.4e-119 433.3 491 50.1
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 2.6e-118 429.9 433 49.7
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 3.4e-118 429.5 433 51.5
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 5.8e-118 428.7 483 50.1
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 7.6e-118 428.3 480 51.7
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 1.4e-116 424.1 391 55.2
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 3.2e-116 422.9 398 52.8
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 2.7e-115 419.9 407 53.6
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 3.5e-115 419.5 435 51.5
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 1.5e-113 414.1 350 62.3
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 5.1e-106 389.0 315 64.1
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 6.7e-106 388.7 420 51.2
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 1.8e-103 380.6 338 58.9
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 7.2e-100 368.6 480 51.9
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 7.9e-99 365.2 340 55.3
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 1.5e-97 360.9 361 50.4
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 7.4e-97 358.6 420 42.9
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 4.8e-96 355.9 341 55.4
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 4.7e-91 339.3 267 59.9
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 5.2e-90 335.9 487 48.5
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 9.4e-84 315.1 482 37.6
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 1.1e-71 275.0 200 66.0
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.8e-71 274.2 172 82.6
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 8.6e-69 265.4 172 81.4
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 3.2e-63 246.9 327 43.4
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 2.1e-59 234.2 412 32.8
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 8.9e-58 228.8 385 37.4
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 4.9e-56 223.0 367 37.9
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 1.9e-55 221.1 293 44.7
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 4.0e-42 176.8 198 50.5
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 6.6e-37 159.5 204 45.1
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 2.5e-36 157.5 380 29.5
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 1.6e-19 101.7 99 56.6
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 9.0e-18 95.9 65 72.3
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 1.2e-14 85.5 86 72.1
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 9.0e-10 69.3 86 59.3
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.4e-09 67.4 78 65.4
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.9e-08 64.3 55 56.4
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.8e-08 63.9 85 58.8
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 8.4e-08 62.8 85 57.6
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 7.1e-07 59.7 79 63.3


User provided reference genes

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